Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01191 ATGAGAAGATCGGGCGTAAACCAACCGAAAGTCAAGCGTCTTGTTGGAAAATATGAAATCGGTCGAACGATTGGTGAGGGTACATTTGCAAAAGTGAAAATAGCCAAAAATTCTGAAAATGGGGAACATGTAGCAATAAAGATCCTTGACAAGGAGAAAGTTCTGAAGCACAAGATGGCTGAACAGATCAAGCGGGAAATAGCGACAATGAAACTAATAAAGCATCCACATGTCGTCCAATTGTTCGAGAAGTGCTCTCTGCAGTTATCTGATACAAATTCTTGTGAAGCTATTTTTCCTAACAGTTCTCTTGATTTTCAGGTTATGGGGAGCAAAACAAAGATATTCATTGTTTTGGAGTTCGTTACCGGAGGCGAACTTTTTGATAAAATTGTAAATCATGGACGGATGACCGAAAGTGAGGCACGGAGATATTTTCAGCAACTTATAAACGCGGTTGATTATTGTCATAGCAGAGGTGTTTACCATAGGGATCTTAAGCCTGAAAATCTATTGTTAGATGCCAAAGGAAATCTTAAAGTGTCTGATTTTGGATTGAGTGCACTGTCACAACAAGTTAAGGACGATGGCTTGCTTCACACTACTTGTGGAACTCCTAACTATGTTGCTCCTGAGGTCCTTAACGATAGAGGCTATGATGGAGCAACTGCAGACTTATGGTCATGTGGAGTCATACTCTTTGTACTGCTTGCAGGTTACTTGCCTTTTGATGATTCTAATATCATAAACCTTTATAAAAAGATCTCGGCCGCTGAATTTACTTGTCCTCCATGGCTTTCTTTAGATGCCATGAAATTGATCGCTCGAATTTTGGATCCGAACCCAATGACTGTAAGCGTGCTTCAAGTGTCTACTATGTTTCTGGATTACACGTCTGATTTTCTTCTATTGCAGCGCATCACCGTACCAGAAATTTTGGAAGATGAATGGTTTAAGAAAGATTATAAGCCCCCGGTTTTCGAGGAGCCTAAGATTGCAAACTTAGATGATGTAGAAGCAGTCTTCAAAGATTCAGAAGAGCACCATGTGACCGAGAAGAAGGAAGAACAACCTGTAGCCATGAACGCCTTCGAGTTAATTTCAATGTCGAAGGGGCTCAACCTGGAAAATTTGTTTGGTACAGAACAGGAATTCAAGAGAGAAACCAGGTTCACCTCTAAATGCTCAGCTAATGAAATTGTGAATAAGATTGAAGAAGCTGCCAAACCTCTTGGTTTTGATGTACAGAAGAAAAATTACAAGATGAGACTCGAAAATGTGAAAGCGGGTCGGAAGGGAAACCTTAATGTTGCCACAGAGATTTTGCAAGTGGCACCTTCTGTTCATGTGGTTGAGATGCGAAAAGCCAAGGGGGACACCTTAGAGTTTCACAAGTTCTACAAAAACCTCTCCACCTCTCTAGAGGATGTTGTTTGGAAGACTGAGGAAGACTTGCCAGCAACGAAGTGA 1470 41.02 MRRSGVNQPKVKRLVGKYEIGRTIGEGTFAKVKIAKNSENGEHVAIKILDKEKVLKHKMAEQIKREIATMKLIKHPHVVQLFEKCSLQLSDTNSCEAIFPNSSLDFQVMGSKTKIFIVLEFVTGGELFDKIVNHGRMTESEARRYFQQLINAVDYCHSRGVYHRDLKPENLLLDAKGNLKVSDFGLSALSQQVKDDGLLHTTCGTPNYVAPEVLNDRGYDGATADLWSCGVILFVLLAGYLPFDDSNIINLYKKISAAEFTCPPWLSLDAMKLIARILDPNPMTVSVLQVSTMFLDYTSDFLLLQRITVPEILEDEWFKKDYKPPVFEEPKIANLDDVEAVFKDSEEHHVTEKKEEQPVAMNAFELISMSKGLNLENLFGTEQEFKRETRFTSKCSANEIVNKIEEAAKPLGFDVQKKNYKMRLENVKAGRKGNLNVATEILQVAPSVHVVEMRKAKGDTLEFHKFYKNLSTSLEDVVWKTEEDLPATK 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7043044 7049892 - CmaCh02G011910.1 Cma02g01191 288942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01191 489 ProSiteProfiles NAF domain profile. 356 380 IPR018451 GO:0007165
Cma02g01191 489 Gene3D Phosphorylase Kinase; domain 1 7 92 - -
Cma02g01191 489 ProSiteProfiles Protein kinase domain profile. 18 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g01191 489 CDD CIPK_C 362 476 - -
Cma02g01191 489 Pfam NAF domain 358 417 IPR004041 GO:0007165
Cma02g01191 489 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Cma02g01191 489 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 7 84 - -
Cma02g01191 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Cma02g01191 489 Pfam Protein kinase domain 18 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g01191 489 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 100 482 - -
Cma02g01191 489 Gene3D Transferase(Phosphotransferase) domain 1 122 325 - -
Cma02g01191 489 SMART serkin_6 18 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g01191 489 SUPERFAMILY Protein kinase-like (PK-like) 14 321 IPR011009 -
Cma02g01191 489 Gene3D Kinase associated domain 1, KA1 355 480 - -
Cma02g01191 489 PANTHER - 100 482 - -
Cma02g01191 489 PANTHER - 7 84 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01191 Cma-Chr2:7043044 Cma03g01424 Cma-Chr3:8903484 0 dispersed
Cma02g01191 Cma-Chr2:7043044 Cma13g00516 Cma-Chr13:5462466 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68363 PF00069 Pkinase 2.00E-63 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01191 - - csv:101221173 835.099