Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01217 ATGAAAATAATAACCTTGAATTCATCGCAAGCTTGTCGTCCAAGCTCATGGCTGTGTATAAAAAAGGAACCCCCTTTCCACTATCTTCACAAAACCAAAACAATGGCTTCCCCTAAACTTGCAGCATTTGTTGTTGCGGCGGTGGGTTTGATGCTGGCCGGGGCCTCTCACGCTCAGCTCAATCCCTTCTTCTACACCTTCACATGCCCTCAGCTGCCTTTTATTGTTCTCAACCAGGTCTCTACAGCTCTTGAAACCGATGATCGAGCAGCTGCCAAGCTCATTCGCCTCCACTTTCACGACTGCTTTGCCAATGGGTGTGACGGGTCTGTGCTACTGGAGAACGTGCCCGACGTCATCGACAGTGAACTAAACGCAGGTGCCAACAATGGGATCCAAGGGCTGGATATTGTGGACAACATCAAAGCAGCCGTTGAAAGCTCTTGCCCTGGCGTTGTGTCCTGCGCTGACATCTTAGCCCTGGCTTCTCAAGTTTCTGTTGTATTGTCTGGCGGGCCAGCCTGGGTGGTTCTACTGGGAAGAAGAGACAGCAGAGTAGCAAACAGAGCCGCAGCAGAGGATCTTCCGAGTCCGTTCGAAACTCTGGATATACTGAAATCGAAATTCAAGGCGTTTGGGCTTGATTCTAGAGACCTTGTGACGCTTTCAGGAGCGCACACGTTCGGTCGATCCAGGTGCTTTTTCTTCACGGGAAGGTTCGACAACTTCAACAACACCGGCCTCCCAGACCCGACTCTGGATGCTGCTTACAGAGAGCAGCTTCGTCAAGCATGCACCACACCAACAACACGAGTGAACTTTGATCCCGTGACACCAGACATATTCGACAAAAACTACTACACCAATCTTCAAAACCTGAAAGGACTTCTCCAAAGTGATCAAGAGCTTTTCTCCACTCCTGGGGCTGATACCACTGCCATTGTCAACGAGTTCGCCGCCAGCCAGCTTCGATTCTTTATTCAATTTGGGAATTCCATGATCAAATTGGGGAACCTCATGCCTCCACCTGGGACACCATCGGAGGTGCGATTGAAGTGTAGGCTGCTCAACCCATCCAGTGCTGCCCGTGATGTTATAAGCTCATGGATAAATGTGTATAAAACGAAGCTCCATTCCACCACTTACTTCGCAAAACCAGCAATGGCTTCCCCCAAGCATACAGCCTTCGCGGTGGTGGTAGCTTTTATGCTAGCCACCACCCACGCTCAGCTCAACCCTTTCTACTACGCTTTGACATGCCCTCTCCTCCCCGGGATCGTCCTCGACGTGGTCTCCCGAGCTTTAAAGACCGACGACCGAGCTGCTGCTAAGCTCATCCGCCTCCATTTCCATGATTGCTTTGTCAATGGATGCGACGGCTCTGTTTTGCTGGAGAATGCACCAGGCATCGACAGTGAACTAAACGCACCTCCCAACGATGGGATCCAAGGGGGTGACATCGTGGACAACATCAAAGCCGAAACAGAACGCTTCTGTCCGGGCGTTGTCTCCTGCGCTGACATTCTAGCCATTTCGTCTCAAATCTCTGTTTTCTTGTCAGGAGGGCCAATTTGGGTAGTGCCATTGGGTAGAAAAGACAGCAGGATAGCCAATAGAACAGGAACCTCAAATCTCCCCGGTCCATCCGAAACTCTCAAAGGACTCAAAGACAAATTTGAGGCTCTTGGGTTTGATTCAACCGATCTTGTGGCTCTATCAGGAGCGCACACGTTCGGGAAATCCAGATGTATGTTCTTCACTGGACGCTTCGACAACTTCAACAACACCGGCAGACCTGACCCAACGCTTGACCCTGCTTACAGGGAGCAGCTTCGACAACTCTGTACAACCCAACAAACAAGAGCGAATTTCGATCCAACCACACCGACCAAATTCGACAAAGCTTATTACAGCAATCTTCTGAACCTGAAAGGCCTTCTCCAAAGTGACCAAGAGCTCTTCTCCACCCCCAGGGCTGACACGACTGCCATCGTCAAGAACTTCGCCGCCAACGAGCGTGCGTTCTTTAAACAATTTGTGAAATCCATGATCAAAATGGGCAATCTCAAGCCGCCTTCCGGCATCAGATCAGAAGTCAGATTAAACTGTCGAAGGGTCAACGCAGCCAGTGGGCATGATGTTATGTAA 2148 50.37 MKIITLNSSQACRPSSWLCIKKEPPFHYLHKTKTMASPKLAAFVVAAVGLMLAGASHAQLNPFFYTFTCPQLPFIVLNQVSTALETDDRAAAKLIRLHFHDCFANGCDGSVLLENVPDVIDSELNAGANNGIQGLDIVDNIKAAVESSCPGVVSCADILALASQVSVVLSGGPAWVVLLGRRDSRVANRAAAEDLPSPFETLDILKSKFKAFGLDSRDLVTLSGAHTFGRSRCFFFTGRFDNFNNTGLPDPTLDAAYREQLRQACTTPTTRVNFDPVTPDIFDKNYYTNLQNLKGLLQSDQELFSTPGADTTAIVNEFAASQLRFFIQFGNSMIKLGNLMPPPGTPSEVRLKCRLLNPSSAARDVISSWINVYKTKLHSTTYFAKPAMASPKHTAFAVVVAFMLATTHAQLNPFYYALTCPLLPGIVLDVVSRALKTDDRAAAKLIRLHFHDCFVNGCDGSVLLENAPGIDSELNAPPNDGIQGGDIVDNIKAETERFCPGVVSCADILAISSQISVFLSGGPIWVVPLGRKDSRIANRTGTSNLPGPSETLKGLKDKFEALGFDSTDLVALSGAHTFGKSRCMFFTGRFDNFNNTGRPDPTLDPAYREQLRQLCTTQQTRANFDPTTPTKFDKAYYSNLLNLKGLLQSDQELFSTPRADTTAIVKNFAANERAFFKQFVKSMIKMGNLKPPSGIRSEVRLNCRRVNAASGHDVM 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7183736 7187262 - CmaCh02G012170.1 Cma02g01217 288968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01217 715 ProSitePatterns Peroxidases active site signature. 91 102 IPR019794 GO:0004601
Cma02g01217 715 PANTHER PEROXIDASE 58 51 357 - -
Cma02g01217 715 PANTHER PEROXIDASE 58 399 707 - -
Cma02g01217 715 Pfam Peroxidase 78 321 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma02g01217 715 Pfam Peroxidase 429 671 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma02g01217 715 PRINTS Haem peroxidase superfamily signature 625 640 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma02g01217 715 PRINTS Haem peroxidase superfamily signature 91 105 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma02g01217 715 PRINTS Haem peroxidase superfamily signature 171 183 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma02g01217 715 PRINTS Haem peroxidase superfamily signature 218 233 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma02g01217 715 PRINTS Haem peroxidase superfamily signature 153 170 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma02g01217 715 PANTHER PEROXIDASE 72-RELATED 51 357 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma02g01217 715 PANTHER PEROXIDASE 72-RELATED 399 707 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma02g01217 715 ProSitePatterns Peroxidases active site signature. 442 453 IPR019794 GO:0004601
Cma02g01217 715 PRINTS Plant peroxidase signature 444 464 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma02g01217 715 PRINTS Plant peroxidase signature 623 638 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma02g01217 715 PRINTS Plant peroxidase signature 483 496 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma02g01217 715 PRINTS Plant peroxidase signature 639 656 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma02g01217 715 PRINTS Plant peroxidase signature 681 694 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma02g01217 715 PRINTS Plant peroxidase signature 420 439 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma02g01217 715 PRINTS Plant peroxidase signature 521 536 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma02g01217 715 PRINTS Plant peroxidase signature 502 512 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma02g01217 715 PRINTS Plant peroxidase signature 567 579 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma02g01217 715 Gene3D - 415 707 - -
Cma02g01217 715 SUPERFAMILY Heme-dependent peroxidases 59 358 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cma02g01217 715 ProSiteProfiles Plant heme peroxidase family profile. 59 357 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma02g01217 715 Gene3D Peroxidase, domain 2 546 686 - -
Cma02g01217 715 Gene3D Peroxidase, domain 2 196 336 - -
Cma02g01217 715 Gene3D - 64 357 - -
Cma02g01217 715 CDD secretory_peroxidase 59 354 IPR033905 GO:0004601|GO:0042744
Cma02g01217 715 ProSitePatterns Peroxidases proximal heme-ligand signature. 568 578 IPR019793 -
Cma02g01217 715 ProSiteProfiles Plant heme peroxidase family profile. 410 707 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma02g01217 715 SUPERFAMILY Heme-dependent peroxidases 410 707 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cma02g01217 715 CDD secretory_peroxidase 410 706 IPR033905 GO:0004601|GO:0042744
Cma02g01217 715 ProSitePatterns Peroxidases proximal heme-ligand signature. 218 228 IPR019793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01217 Cma-Chr2:7183736 Cma20g00047 Cma-Chr20:208905 0 dispersed
Cma02g01216 Cma-Chr2:7179685 Cma02g01217 Cma-Chr2:7183736 1.90E-128 tandem
Cma02g01217 Cma-Chr2:7183736 Cma02g01218 Cma-Chr2:7188889 6.17E-61 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01217 - K00430 aprc:113852209 624.78