Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01218 ATGGAAGCCTCCAGCTGCAGATTAAAGGGTCGTTTTGCTTTGCTTATGATCGTTTTTCTCATGCTGTGTGGTGCCACAAGGGCACAGCTAACCGTGGATTTCTACAAGAGTTCATGTCCAAACCTTCTCAGAATCGTGAGAAGAGAAGTCGTGAAAGCTATAAAGAGCGAGATGAGAACGGCAGCTTCACTCCTTCGCTTGCACTTCCACGACTGCTTTGTTAATGGTTGTGACGGATCAGTGCTGTTGGATGGAAGTGATGGGGAGCAATTTGCACTTCCCAACATCAATTCTCTTAGACGGCTTGAAGTTATTGATTCAATCAAAAGCGCGGTGGAGAATTCTTGTAGCGGAGTTGTGTCATGTGCTGATATATTAACCTTAGCTGCTAGAGACTCTGTTCTCTTGAGTGGAGGACCAACATGGAAGGTTTTACTGGGGAGAAGAGATGGATTGGTGGCCAACAAAACTGGAGCAGATAAGGGACTGCCCGCTCCATTTGAGAACATTGATGGAGCCCACACAATTGGGTTTGCAAGGTGTGCGATGTTCAACAATAGGCTATTCAACTTCTCAGGGAGTGGGTCGCCAGACCCCACCATGGAGAGCAGAATGGTGTCGGATCTGCAGGCGTTATGCCCTCTCACCGACGATGGCAACAAGACCACAGTGCTTGATAGGAACTCTACGGATTTATTTGACAACCATTACTACAAGAACTTGCTCAACCAAAAGGGGCTGTTGGAATCAGACCAAATTCTGTTCTCCAGCGCTGCAGCTCAAAGCAGCACAAAAAGCTTGGTGGAAGATTACAGCTCAAACACGACGCGTTTCTTTGAAGACTTTGGGTGTGATGCGTCTGTTTTGCTTGAGAATGCACCTGGCATCGACAGTGAACTAGACGCCCCTGGAAATCAAGGCATTCAAGGTCTTAACATCATTGACGACATCAAATCTGCTGTCGAAAAGGCTTGCCCACGTACTGTCTCCTGTGCTGACATTTTGACCATTGCCTCTAGAGAATCTGTCGTTCTGGCTGGTGGGCCGAGCTGGATTGTGCCATTGGGACGAAGAGACAGCCGAACAGCCAATAAGGAGGGAGCCACCAACAACCTCGCCAGCCCCTTTGAAGACCTCGATGGACTCAAAGCCAAGTTCTCTGTTTTCGGCCTCGACTCCACTGATCTTGTTGCTCTGTCCGGAGCACATACATTTGGGCGTTCAAGATGCGCGTTTTTCAGCCATCGTTTCGCGAATTTCAACGGCACCAACAGGCCAGATCCGACACTAGACCCAGCTTACAGAGAGCAACTCCGGAGGGTTTGTTCTAGCTCAGAGACACGAGCCAATTTTGACCCGACAACGCCAGACAAATTTGACAAGAACTATTACACCAATCTTCAGGGGCTTCGAGGGCTTCTTCAGAGCGATCAAGAACTGTTCTCGACTCGGGGGGCTGACACGGTGGCGATTGTGAACCGTTTCGCGAAAAGCCAAGATGAGTTCTTTAAAAGTTTTGGTCGGTCTATGATCAAAATGGGCAACATTAGCCCTTTAACTGGAAAGAAAGGAGAAATTAGATTGAACTGTCGGAGGGTTAATTCTCCACCAAGGGCCGATGAGGGGCATGATGTTATGTAA 1641 48.39 MEASSCRLKGRFALLMIVFLMLCGATRAQLTVDFYKSSCPNLLRIVRREVVKAIKSEMRTAASLLRLHFHDCFVNGCDGSVLLDGSDGEQFALPNINSLRRLEVIDSIKSAVENSCSGVVSCADILTLAARDSVLLSGGPTWKVLLGRRDGLVANKTGADKGLPAPFENIDGAHTIGFARCAMFNNRLFNFSGSGSPDPTMESRMVSDLQALCPLTDDGNKTTVLDRNSTDLFDNHYYKNLLNQKGLLESDQILFSSAAAQSSTKSLVEDYSSNTTRFFEDFGCDASVLLENAPGIDSELDAPGNQGIQGLNIIDDIKSAVEKACPRTVSCADILTIASRESVVLAGGPSWIVPLGRRDSRTANKEGATNNLASPFEDLDGLKAKFSVFGLDSTDLVALSGAHTFGRSRCAFFSHRFANFNGTNRPDPTLDPAYREQLRRVCSSSETRANFDPTTPDKFDKNYYTNLQGLRGLLQSDQELFSTRGADTVAIVNRFAKSQDEFFKSFGRSMIKMGNISPLTGKKGEIRLNCRRVNSPPRADEGHDVM 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7188889 7193852 - CmaCh02G012180.1 Cma02g01218 288969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01218 546 CDD secretory_peroxidase 278 533 IPR033905 GO:0004601|GO:0042744
Cma02g01218 546 ProSiteProfiles Plant heme peroxidase family profile. 29 534 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma02g01218 546 PANTHER PEROXIDASE 72-RELATED 15 282 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma02g01218 546 ProSitePatterns Peroxidases active site signature. 61 72 IPR019794 GO:0004601
Cma02g01218 546 PANTHER PEROXIDASE 59 283 533 - -
Cma02g01218 546 Gene3D - 30 167 - -
Cma02g01218 546 CDD secretory_peroxidase 29 283 IPR033905 GO:0004601|GO:0042744
Cma02g01218 546 ProSitePatterns Peroxidases proximal heme-ligand signature. 395 405 IPR019793 -
Cma02g01218 546 PRINTS Plant peroxidase signature 224 239 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma02g01218 546 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma02g01218 546 PRINTS Plant peroxidase signature 138 153 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma02g01218 546 PRINTS Plant peroxidase signature 39 58 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma02g01218 546 PRINTS Plant peroxidase signature 119 129 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma02g01218 546 PRINTS Plant peroxidase signature 240 257 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma02g01218 546 PRINTS Plant peroxidase signature 63 83 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma02g01218 546 PANTHER PEROXIDASE 72-RELATED 283 533 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma02g01218 546 Gene3D Peroxidase, domain 2 168 284 - -
Cma02g01218 546 Gene3D - 285 534 - -
Cma02g01218 546 SUPERFAMILY Heme-dependent peroxidases 283 534 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cma02g01218 546 Pfam Peroxidase 172 273 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma02g01218 546 Pfam Peroxidase 283 498 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma02g01218 546 Pfam Peroxidase 46 171 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma02g01218 546 PANTHER PEROXIDASE 59 15 282 - -
Cma02g01218 546 PRINTS Haem peroxidase superfamily signature 452 467 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma02g01218 546 PRINTS Haem peroxidase superfamily signature 61 75 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma02g01218 546 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma02g01218 546 PRINTS Haem peroxidase superfamily signature 138 150 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma02g01218 546 SUPERFAMILY Heme-dependent peroxidases 29 282 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cma02g01218 546 Gene3D Peroxidase, domain 2 373 513 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01218 Cma-Chr2:7188889 Cma20g00048 Cma-Chr20:216888 1.55E-76 dispersed
Cma02g01217 Cma-Chr2:7183736 Cma02g01218 Cma-Chr2:7188889 6.17E-61 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01218 K00430 - csv:101211507 449.899