Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01235 ATGGATCCGCCTCACCCATCCCCGCCGGAGCTTCATCTTCCTAATCTAACTCCCCTCAAGCTACTCGGACAAGGAGCCATGGGGACTGTCTTTCTCGTCCACGACCACCTTCTTGATCACGCGGCTAATTTCCCCTTTGCTCTCAAGGTCGTCCACAAATCGTCTTTTGTCTCTAAGCACCAAGCCGAGCGCCGCGCTCGTTGGGAGATTCAGGTTCTTTCCCGCTTATCACTCCCTAAACCACACCCCTTTCTCCCTGACCTCATCGGATCCTTCGAGTCCGACGAGTTTTTGGGCTGGGCTGTTCCGTACTGTCCCGGTGGTGACCTTAACGTCTTGCGTTACCGCCAAATGGACCGTGTCTTCTCGCCAGCTGTCATTCGGTTCTATTTGGCTGAGATCGTCTGTGCGCTAGAGCATCTTCATAGCATCGACATCGTATACCGAGATTTGAAGCCGGAGAATGTATTAATTCAACAATCGGGTCATGTCACTCTCACCGATTTTGATTTGTCGCGTCAGTTGACTCGTAGGACAGTTAAAGACGTCGTTTCGCTTGATGATTCCGGCCACGAGAAGCTGCCGGTGGTCGCCCGGCGGAACTTTACGCAATGGATTGTGGGGACCTCTAAAGTCAAAAAGTGTTTGAGAAAGGCTAAATCGGCTCGGGTTAGCCCTGTGAGCCGCTGGAAATCGGGTTTAATAATTAATAATGGCGAGCGGTCGAACTCGTTCGTTGGAACAGAGGAGTACGTTTCGCCGGAAATCGTTCGAGGTGAGGGACATGAATTCGCCGTTGACTGGTGGGCCTTGGGAATTCTCACGTACGAGATGCTCTATGGGAAGACGCCGTTTAAGGGGACTAACCGTAAAGAAACGTTTAGGAACGTTCTAGTCAAAGCCCCAGAGCTAATCGGAAAGCGTTCAGATTTAACGGATTTGATCGAACGGTTGCTGGTGAAGGACCCCACCAAGCGGTTGGGGTACACCCGAGGAGCGTGTGAAATCAAAGAGCATGCGTTTTTTAACGGCGTTAAGTGGGACATATTAACGGAGGTCATGCGACCGCCATTTTTACCGGCTCGTGAAGAAACGGGATGGAGGGAGAATAAATCCCCCGGTGGTGTGGGTATAGAGGAATACTTTCATAGACAGAGATCGCCGCCTTCATTTCCACCGTCGCCGTCGCCGTCGCCGTCGTCATCTCCGTCAACCTCCTTCCATTTGCACAATAACAGCATATGTTTAGCGGAGTTCTAA 1260 51.51 MDPPHPSPPELHLPNLTPLKLLGQGAMGTVFLVHDHLLDHAANFPFALKVVHKSSFVSKHQAERRARWEIQVLSRLSLPKPHPFLPDLIGSFESDEFLGWAVPYCPGGDLNVLRYRQMDRVFSPAVIRFYLAEIVCALEHLHSIDIVYRDLKPENVLIQQSGHVTLTDFDLSRQLTRRTVKDVVSLDDSGHEKLPVVARRNFTQWIVGTSKVKKCLRKAKSARVSPVSRWKSGLIINNGERSNSFVGTEEYVSPEIVRGEGHEFAVDWWALGILTYEMLYGKTPFKGTNRKETFRNVLVKAPELIGKRSDLTDLIERLLVKDPTKRLGYTRGACEIKEHAFFNGVKWDILTEVMRPPFLPAREETGWRENKSPGGVGIEEYFHRQRSPPSFPPSPSPSPSSSPSTSFHLHNNSICLAEF 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7272237 7273496 - CmaCh02G012350.1 Cma02g01235 288986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01235 419 Gene3D Transferase(Phosphotransferase) domain 1 109 178 - -
Cma02g01235 419 Pfam Protein kinase domain 236 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g01235 419 Pfam Protein kinase domain 19 182 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g01235 419 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Cma02g01235 419 ProSitePatterns Protein kinases ATP-binding region signature. 22 49 IPR017441 GO:0005524
Cma02g01235 419 PANTHER SERINE/THREONINE-PROTEIN KINASE UCNL 11 389 - -
Cma02g01235 419 ProSiteProfiles Protein kinase domain profile. 16 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g01235 419 PANTHER FLIPPASE KINASE 1-RELATED 11 389 - -
Cma02g01235 419 Gene3D Phosphorylase Kinase; domain 1 18 108 - -
Cma02g01235 419 SMART serkin_6 16 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g01235 419 MobiDBLite consensus disorder prediction 382 410 - -
Cma02g01235 419 Gene3D Transferase(Phosphotransferase) domain 1 238 361 - -
Cma02g01235 419 SUPERFAMILY Protein kinase-like (PK-like) 15 408 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01235 Cma20g00071 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01235 Cma-Chr2:7272237 Cma08g00240 Cma-Chr8:1334804 8.16E-87 dispersed
Cma02g01235 Cma-Chr2:7272237 Cma20g00071 Cma-Chr20:311465 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68365 PF00069 Pkinase 3.70E-30 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01235 - K08286 csv:101207338 640.573