Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma02g01236 | ATGATTAGTAACTATGAGAAGGAAGTGGAGGAAATGAAGCACATGACAAGACAAGAATTTGTGGCTGCCATTACAAGGAAGAGTAGTGGGTTTTCATGGGGTGCATCAATGTATCGTGGTGTTACAAGGCACCACCAGCATGGAAGATGGCAGGCCAGGATTGGACGAGTGGCTGGAAACAAAGATCTTTATTTGGGAACTTTCAGCACGGAAGAGCAAGAGCAAGAGCAAGAGCAAGAGCAAGCGGCGGAAGCATATGACATAGCCGCCATCAAATTCAGAGGGCTTAACGCAGTCACAAACTTTGACATGTGTCGTTATGACGTGAAGAGCATATTGGACAGCAATTCTGTCCCTATTGGCGGTGGTGCGGCCAAGCGACTGAAAGAAGCCCAGGCCATGGAAGCCTCTCGAAAGCGTGAGGAAATGATGATTGCTCTTGGTGCTTCCTCCTCCTCCTCTAATTCCTCCCATCATAGGCTTCTTCAATCACCCAATTTCACCCAGCCTTTGCTTTCTCTTCAAAACAAAGATCCGGCGTGGTTTCACCACTCTACTTATTCCCACTATGGTAACAACACTCCGTTTTACGGCGGCGGCGGGGGAGACAGTAGTGGAGGGTACCTTGGAAGTGCGTTAGGGATGGGGTGTACGTCGGGGGATGAATACGCGTTGGTTAAGGTGGATTACGATATGCCTAATTCTGACGGTGGTGGGTATGGGCGGTGGTCGGGGGATTCGGTTCTGGGTTCCAACAATGGGGGGTTTTGA | 771 | 49.81 | MISNYEKEVEEMKHMTRQEFVAAITRKSSGFSWGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEQEQEQEQEQAAEAYDIAAIKFRGLNAVTNFDMCRYDVKSILDSNSVPIGGGAAKRLKEAQAMEASRKREEMMIALGASSSSSNSSHHRLLQSPNFTQPLLSLQNKDPAWFHHSTYSHYGNNTPFYGGGGGDSSGGYLGSALGMGCTSGDEYALVKVDYDMPNSDGGGYGRWSGDSVLGSNNGGF | 256 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 7276258 | 7277362 | - | CmaCh02G012360.1 | Cma02g01236 | 288987 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma02g01236 | 256 | ProSiteProfiles | AP2/ERF domain profile. | 37 | 103 | IPR001471 | GO:0003700|GO:0006355 | |
| Cma02g01236 | 256 | Gene3D | AP2/ERF domain | 37 | 104 | IPR036955 | GO:0003700|GO:0006355 | |
| Cma02g01236 | 256 | SUPERFAMILY | DNA-binding domain | 36 | 104 | IPR016177 | GO:0003677 | |
| Cma02g01236 | 256 | SMART | rav1_2 | 37 | 109 | IPR001471 | GO:0003700|GO:0006355 | |
| Cma02g01236 | 256 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 | 2 | 157 | - | - | |
| Cma02g01236 | 256 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 2 | 157 | - | - | |
| Cma02g01236 | 256 | CDD | AP2 | 36 | 103 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma02g01236 | Cma-Chr2:7276258 | Cma05g00792 | Cma-Chr5:5023853 | 1.49E-08 | dispersed | |
| Cma02g01236 | Cma-Chr2:7276258 | Cma20g00072 | Cma-Chr20:315450 | 1.39E-06 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 34508 | PF00847 | AP2 | 7.50E-05 | CL0081 | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma02g01236 | K09285 | - | cmax:111490761 | 464.536 |