Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01236 ATGATTAGTAACTATGAGAAGGAAGTGGAGGAAATGAAGCACATGACAAGACAAGAATTTGTGGCTGCCATTACAAGGAAGAGTAGTGGGTTTTCATGGGGTGCATCAATGTATCGTGGTGTTACAAGGCACCACCAGCATGGAAGATGGCAGGCCAGGATTGGACGAGTGGCTGGAAACAAAGATCTTTATTTGGGAACTTTCAGCACGGAAGAGCAAGAGCAAGAGCAAGAGCAAGAGCAAGCGGCGGAAGCATATGACATAGCCGCCATCAAATTCAGAGGGCTTAACGCAGTCACAAACTTTGACATGTGTCGTTATGACGTGAAGAGCATATTGGACAGCAATTCTGTCCCTATTGGCGGTGGTGCGGCCAAGCGACTGAAAGAAGCCCAGGCCATGGAAGCCTCTCGAAAGCGTGAGGAAATGATGATTGCTCTTGGTGCTTCCTCCTCCTCCTCTAATTCCTCCCATCATAGGCTTCTTCAATCACCCAATTTCACCCAGCCTTTGCTTTCTCTTCAAAACAAAGATCCGGCGTGGTTTCACCACTCTACTTATTCCCACTATGGTAACAACACTCCGTTTTACGGCGGCGGCGGGGGAGACAGTAGTGGAGGGTACCTTGGAAGTGCGTTAGGGATGGGGTGTACGTCGGGGGATGAATACGCGTTGGTTAAGGTGGATTACGATATGCCTAATTCTGACGGTGGTGGGTATGGGCGGTGGTCGGGGGATTCGGTTCTGGGTTCCAACAATGGGGGGTTTTGA 771 49.81 MISNYEKEVEEMKHMTRQEFVAAITRKSSGFSWGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEQEQEQEQEQAAEAYDIAAIKFRGLNAVTNFDMCRYDVKSILDSNSVPIGGGAAKRLKEAQAMEASRKREEMMIALGASSSSSNSSHHRLLQSPNFTQPLLSLQNKDPAWFHHSTYSHYGNNTPFYGGGGGDSSGGYLGSALGMGCTSGDEYALVKVDYDMPNSDGGGYGRWSGDSVLGSNNGGF 256
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 7276258 7277362 - CmaCh02G012360.1 Cma02g01236 288987
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01236 256 ProSiteProfiles AP2/ERF domain profile. 37 103 IPR001471 GO:0003700|GO:0006355
Cma02g01236 256 Gene3D AP2/ERF domain 37 104 IPR036955 GO:0003700|GO:0006355
Cma02g01236 256 SUPERFAMILY DNA-binding domain 36 104 IPR016177 GO:0003677
Cma02g01236 256 SMART rav1_2 37 109 IPR001471 GO:0003700|GO:0006355
Cma02g01236 256 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 2 157 - -
Cma02g01236 256 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 2 157 - -
Cma02g01236 256 CDD AP2 36 103 IPR001471 GO:0003700|GO:0006355
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01236 Cma-Chr2:7276258 Cma05g00792 Cma-Chr5:5023853 1.49E-08 dispersed
Cma02g01236 Cma-Chr2:7276258 Cma20g00072 Cma-Chr20:315450 1.39E-06 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34508 PF00847 AP2 7.50E-05 CL0081 Cma TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01236 K09285 - cmax:111490761 464.536