Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01240 ATGGCTGATCCCTACTCCATCAATGCCTCCTCTTTTAGTTTATACCATTACTTCTCTTCTTCTTCTTCTTCCCCACCTTCTAATTCTAATCCTTTCTCTCCTTACGATCTCTTCTCGTTCTCTTACTCCAACGATGATAATGATAATAATACCCTAAAGAACCCCTCTTCCTCACCTCGAGTTCTCCCGCTTTTAAGTTTAAGCCCCGTGAGACATGATCACCAAGATCACTTATTTTCTCGTGATAACAACAAGAACTTGTGTAGTCCTTGTGAAGAAGACGATGACGAGACGGTTACGGTCGCTTTGCATTTAGGGCTTCCATCAGCTCCGTCTTCGTCTTCTTCCTCTGATCTGATTTTGAGGCTTTCTTCAACTGAGATCTCGGATAAATTAGAAGGTCAATTAGAAGAAGCGGTACCCGTGGTTGTTCCTAATTATTACTCCGTCTCGTCATCGTCATCTTCCTCCACAACTGGTGGTGGACTCAACAAGGGTCAGTATTGGATTCCCACTCCAGCTCAGATTCTCATTGGTCCAACTCAGTTTTCTTGCCCTCTTTGCTTCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAATACAGAAAAGGGCCACAGTCACTAAGAGGAACACAGCCAACAGCAATGCTAAGGCTCCCATGTTATTGCTGTGCACCAGGGTGCAGAAACAACATAGACCATCCGAGGTCAAAGCCACTAAAAGACTTCCGAACCCTTCAAACGCATTACAAACGAAAGCATGGAATCAAGCCATTTACTTGTAGGAAATGTGGGAAAGCCTTTGCTGTTAGAGGGGATTGGAGAACCCATGAGAAGAACTGTGGGAAGCTTTGGCATTGCACTTGTGGGTCTGATTTTAAGCACAAAAGGTCTTTGAAAGATCACATAAAAGCCTTTGGACATGGACATGCAGCTTATGGGATTGACTCTTTTGACGAAGATGATGAGCCTGCTTCCGAGATTGAACACGATAACGACTTGTCTCACAGCAATGGAGATTGA 1047 44.13 MADPYSINASSFSLYHYFSSSSSSPPSNSNPFSPYDLFSFSYSNDDNDNNTLKNPSSSPRVLPLLSLSPVRHDHQDHLFSRDNNKNLCSPCEEDDDETVTVALHLGLPSAPSSSSSSDLILRLSSTEISDKLEGQLEEAVPVVVPNYYSVSSSSSSSTTGGGLNKGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPQSLRGTQPTAMLRLPCYCCAPGCRNNIDHPRSKPLKDFRTLQTHYKRKHGIKPFTCRKCGKAFAVRGDWRTHEKNCGKLWHCTCGSDFKHKRSLKDHIKAFGHGHAAYGIDSFDEDDEPASEIEHDNDLSHSNGD 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7287914 7290519 - CmaCh02G012400.1 Cma02g01240 288991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01240 348 ProSiteProfiles Zinc finger C2H2 type domain profile. 183 210 IPR013087 -
Cma02g01240 348 PANTHER ZINC FINGER PROTEIN WIP2 1 341 IPR043584 GO:0003700|GO:0010468
Cma02g01240 348 MobiDBLite consensus disorder prediction 328 348 - -
Cma02g01240 348 SMART c2h2final6 267 287 IPR013087 -
Cma02g01240 348 SMART c2h2final6 293 316 IPR013087 -
Cma02g01240 348 SMART c2h2final6 183 205 IPR013087 -
Cma02g01240 348 ProSitePatterns Zinc finger C2H2 type domain signature. 185 205 IPR013087 -
Cma02g01240 348 SUPERFAMILY beta-beta-alpha zinc fingers 248 287 IPR036236 -
Cma02g01240 348 Gene3D Classic Zinc Finger 244 321 - -
Cma02g01240 348 ProSiteProfiles Zinc finger C2H2 type domain profile. 267 294 IPR013087 -
Cma02g01240 348 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 1 341 - -
Cma02g01240 348 Gene3D Classic Zinc Finger 182 205 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01240 Cma20g00075 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01240 Cma-Chr2:7287914 Cma03g00093 Cma-Chr3:930592 7.31E-130 dispersed
Cma17g00951 Cma-Chr17:7075795 Cma02g01240 Cma-Chr2:7287914 2.54E-115 wgd
Cma02g01240 Cma-Chr2:7287914 Cma20g00075 Cma-Chr20:330635 0 wgd
Cma02g01240 Cma-Chr2:7287914 Cma08g00533 Cma-Chr8:3088730 3.31E-116 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34509 None None None None Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01240 - - bhj:120089206 464.151