Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01246 ATGGATTCAGAGGATTTGAGAGATTACTACAAGACTGGTACAACAAAGGAGGCCTCTTGGAGGGTGTCACAGCTCAAAGCCTTACGCCAACTTATAGAACACAATGAACACCAAATTTACAGCGCCCTTATGCAAGATTTGGGGAAACACCAAGTTGAAGCTTTTAGAGATGAGATTGGTACTCTGCAAAAGTCCCTAAACTCTGCTTTGGATAATTTGAAGCATTGGATGTCACCCAAAAAGGCAAAGCTGCCATTAATAGCGTTGCTAAGCTCAGCTGAAATGGTTCCACAGCCTTTGGGCGTTGTTCTTATAATCTCATCTTGGAATTTTCCGTTTGGGTTGTCGTTGGAGCCGTTGATTGGAGCAATAGCTGCCGGAAATTGCGTGGTTTTGAAGACGTCGGAGTCTGCTCCGGCGAGTTCGGCTTTGCTGGCGAATACCATCGGGAAATATGTTGATAATAAAGCTGTGAGGGTTGTGGAAGGTGGGGCGGCGGATGGGGAGCGGCTGCTGCAGCAGCGGTGGGAGAAGATTTTCTTTACAGGTGGAAGAAGTGAACGAGTGGGGCGGATTGTTATGGCGGCCGCCGCGAAACACCTGACGCCGGTGACTTTGGAGCTCGGCGGGAAGTGCCCCGCCATCGTTGACTCACTCTCATTTTCATGGGACATTGAGGCTACTGCCAAACGGATCGTCATCGGAAAATTCGGGAACTGCGCCGGTCAAGCTTGCATTGCAATCGATTATGTCCTCATTGAACATAGGTTTATACCTACATTGGTCGAATTGATGAAGAAGTTTATCAAGGAATTCTTTGATAAAAGTTCGAACCAGGCGAAAACCATGGCGAGGATCGTAAACAAACAAAATTTCTTGAGATTGAAGAATCTGGTGGATGAACCTGATGTACGAGCTACGATCATCTATGGGGGATCCATGGACGAAGACAAATTGTTTGTTGAGCCGACTATTCTGTTGAATCCGCCAAGCGATGCAGAAATTATGACGGATGAAATCTTTGGACCATTGCTTCCCATAATTGGACTGGACAGGATTGAAGACAGTATAGATTTCATCAATTCAAAACCTAAGCCTCTCGCCGTTTATGCCTTCACAAAGGATAAAGCTTTCCAAAGGAGACTCGTCTCAGAAACCTCGTCCGGCAGTTTGACATTCAATGATGCAATTATTCAGTATGCAGCCGATACACTCCCGTTTGGAGGGGTTGGTGAAAGTGGGATTGGAAGGTACCATGGAAAATTCTCATTCGACACTTTTAGTCATGAAAAGGCTGTTCTGAAGAGGAGCTTTTTGGTTGACTTCTGGTTCAGATATCCGCCATGGAACAGTCACAAGCTTCAGCTGCTTCGAGAAGCTTACAGTCTTAACTATTTTCAGCTTGTTCTCACTGTTTTGGGTTTGAAAAAGTCCTAA 1437 45.72 MDSEDLRDYYKTGTTKEASWRVSQLKALRQLIEHNEHQIYSALMQDLGKHQVEAFRDEIGTLQKSLNSALDNLKHWMSPKKAKLPLIALLSSAEMVPQPLGVVLIISSWNFPFGLSLEPLIGAIAAGNCVVLKTSESAPASSALLANTIGKYVDNKAVRVVEGGAADGERLLQQRWEKIFFTGGRSERVGRIVMAAAAKHLTPVTLELGGKCPAIVDSLSFSWDIEATAKRIVIGKFGNCAGQACIAIDYVLIEHRFIPTLVELMKKFIKEFFDKSSNQAKTMARIVNKQNFLRLKNLVDEPDVRATIIYGGSMDEDKLFVEPTILLNPPSDAEIMTDEIFGPLLPIIGLDRIEDSIDFINSKPKPLAVYAFTKDKAFQRRLVSETSSGSLTFNDAIIQYAADTLPFGGVGESGIGRYHGKFSFDTFSHEKAVLKRSFLVDFWFRYPPWNSHKLQLLREAYSLNYFQLVLTVLGLKKS 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7317053 7320170 - CmaCh02G012460.1 Cma02g01246 288997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01246 478 PIRSF ALDH 2 472 IPR012394 GO:0006081
Cma02g01246 478 Pfam Aldehyde dehydrogenase family 17 433 IPR015590 GO:0016491
Cma02g01246 478 PANTHER ALDEHYDE DEHYDROGENASE 4 478 - -
Cma02g01246 478 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 210 413 IPR016163 GO:0016620
Cma02g01246 478 PANTHER ALDEHYDE DEHYDROGENASE 4 478 IPR012394 GO:0006081
Cma02g01246 478 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 7 431 IPR016162 GO:0016491
Cma02g01246 478 SUPERFAMILY ALDH-like 7 450 IPR016161 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01246 Cma-Chr2:7317053 Cma09g00785 Cma-Chr9:3798961 4.17E-169 dispersed
Cma02g01246 Cma-Chr2:7317053 Cma01g01383 Cma-Chr1:9802339 1.89E-165 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01246 K00128 - csv:101205263 799.66