Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01248 ATGAGGAAGCCCGACGCTGCTGCGCCCGGCGGAGGATGCGGCGGACCAGCTCCCACCAAGCTCAGAAAAGGGCTGTGGTCGCCGGAGGAAGACGACAAGTTACGAACCTACATGCTCAACAATGGCCAAGGCTGCTGGAGCGATGTGGCTCGTAATGCCGGCCTTCAGCGCTGTGGCAAGAGCTGCCGCCTCCGTTGGATCAATTACTTGCGGCCTGATCTCAAACGCGGCGCCTTCTCTCCCCAAGAAGAAGACCTCGTCATCCACTTGCATTCTCTTCTTGGCAACAGATGGTCTCAGATAGCGGCTCGATTACCGGGAAGAACGGATAACGAGATTAAGAATTTTTGGAACTCGACTATTAAAAAGAGGCTTAAGAATTTGTCCTCCACGCCGTCGCCGAATACCAGCTCCGACTCGCCCTCCGGTGACTCAAAATCCAATCTTTTTCCCACCTTTTTATTAGGTCAAGATCAACAACAACAACAAAACTCAATCGACTTTCCGATCTTCGCTGCCGATCCATCACCTTCCGTTATCGCCCTCGACCCTTTCCCTCTTCTCTCCACCACCCACGGCATACCATTCTTCCCCAGCGCTGCCCCAACCTTCACCGGTGGCGTCGAGATGGGATTCTATCGTGAAGACGATAGCTTCTTTAATCTCCCTCTTTTGCAAAGCGTTAACACAACCACGACCACCGCCACCGCCACCGCAGCCACCGGTGGAGAAACTAAACATAGTAATTACTTAATTAACAACAATCCAAAGATGGAAAGCATGAATGGTGGGGTTGGAGCAAATTTTATTCACGAGGAGTTTTCAATGGGCGAATGGGAGTTGGAGGATTTGATGAAAGACTTTCCATCTTCTATCGAATCGTATTCTTCAATCGAATCCTCCACCGTCGGATTTGTTTCCAGTAGTCGCTTCTCTCTTCTCAAAATCCGTATCTCCACCGGAGCTTCGTTTTCCCCCGCCGACGCCGCCGACGCCGGATTGAATCAGGACCGGTTGATGGCGTCGTTGGCGCTTACTTCCTCGTTTCTCCCTTCTCTCCAATTGCGCCGTCGGAAACCCGAGGTAAATGCTCAAATCCGCTTCTCCTCTCTCCGTTCAAGTCTTCCTAAAACCGCCATTTTCGGGAGCGGCGTCAGAACTAGCTTCCGCATTCCGTCTTCTCTATCCAGTGAAGCTAAATCGATTAAACCAGCTCTAGATTTCAGAAGCTCTCGTGGAAATCTTGGTGCCTTTACTGTCCGAGCGGCTTCCTCTTCTCCTTCTACTGTAGCTCCGGCTTCTCAGCCATGGCAAGGTGCGGCGATTAAGCCACTTATTGCTTCCATTGCTACGGGTATCGTTCTGTGGTTTGTTCCGGTGCCGTCTGGTGTTTCTCGAAACGCGTGGCAATTGCTTGCGATTTTCCTTGCTACGATTGTTGGGATTATTACTCAGCCTTTGCCCCTTGGTGCTGTTGCTTTGCTTGGACTTGGCGCCTCTGTTCTAACTAAAACCCTAACCTTCTCTGCTGCCTTCTCTGCGTTTGGTGATCCGATCCCATGGCTCATCGCTCTTGCCTTCTTCTTTGCTCGAGGGTTCATTAAGACCGGACTTGGTAATCGAATTGCTTATCAATTTGTTTCTCTATTCGGTAGTTCGACGTTAGGGTTAGGGTATAGTTTAGTGTTCAGTGAGGCTCTGTTGGCGCCGGCAATTCCTTCAGTGTCTGCCAGAGCAGGAGGAATATTCCTTCCATTGGTGAAATCGCTCTGTGTTGCTTGCGGTAGCAATGCTGGTGATGGCACAGAAAAACGGTTGGGATCGTGGTTGATGCTCACTTGCTTTCAAACTTCGGTGATTTCATCATCCATGTTCTTGACAGCTATGGCTGCTAATCCTCTGAGTGCCACTCTGACGTATAACACGATCAAGCAGACCATTGGATGGACCGACTGGGCTAAAGCAGCGATTGTTCCAGGATTAATCTCCTTGATTGTGGTGCCATTGCTTCTGTATGTAATCTATCCGCCCACCGTGAAGAGCAGTCCAGACGCACCCAAGCTTGCCAGAGAGAAGTTAGAAAAGATGGGACCAATGTCCAACAACGAGATTATAATGGCTGGAACTCTGCTTCTCACGGTGGGTCTTTGGGTTTTTGGAGGGATTCTTAATGTGGACGCTGTTACTGCTGCCATTTTGGGATTGTCCGTCCTTCTTGTGACTGGGGTGGTGACATGGAAAGAGTGCTTGGCAGAAGCTGTTGCCTGGGACACTCTAACATGGTTTGCTGCACTCATTGCAATGGCAGGGTATCTCAACAAATATGGTCTCATCTCCTGGTTCAGCCAAACTGTAGTGAAGTTTGTTGGTGGACTTGGGCTTTCATGGCAGCTTTCATTCGGCATTTTAGTTCTTCTCTATTTCTACTCCCACTACTTCTTTGCGAGTGGAGCTGCTCATATAGGCGCTATGTTTACAGCCTTCTTATCCGTTGCTAGTGCTTTGGGGACTCCCCCCTACTTCGGAGCCATTGTACTTTCCTTCTTATCCAACCTGATGGGTGGCTTAACCCACTACGGCATTGGGTCAGCCCCTGTCTTCTATGGTGCCAACTATGTTCCTCTTGCTCAATGGTGGGGCTACGGGTTCCTCGTATCTGTTGTCAACATCATTATCTGGCTCGGCGCTGGGGGAATTTGGTGGAAGGCCATTGGTCTATGA 2721 50.06 MRKPDAAAPGGGCGGPAPTKLRKGLWSPEEDDKLRTYMLNNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEDLVIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNLSSTPSPNTSSDSPSGDSKSNLFPTFLLGQDQQQQQNSIDFPIFAADPSPSVIALDPFPLLSTTHGIPFFPSAAPTFTGGVEMGFYREDDSFFNLPLLQSVNTTTTTATATAATGGETKHSNYLINNNPKMESMNGGVGANFIHEEFSMGEWELEDLMKDFPSSIESYSSIESSTVGFVSSSRFSLLKIRISTGASFSPADAADAGLNQDRLMASLALTSSFLPSLQLRRRKPEVNAQIRFSSLRSSLPKTAIFGSGVRTSFRIPSSLSSEAKSIKPALDFRSSRGNLGAFTVRAASSSPSTVAPASQPWQGAAIKPLIASIATGIVLWFVPVPSGVSRNAWQLLAIFLATIVGIITQPLPLGAVALLGLGASVLTKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVSLFGSSTLGLGYSLVFSEALLAPAIPSVSARAGGIFLPLVKSLCVACGSNAGDGTEKRLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTYNTIKQTIGWTDWAKAAIVPGLISLIVVPLLLYVIYPPTVKSSPDAPKLAREKLEKMGPMSNNEIIMAGTLLLTVGLWVFGGILNVDAVTAAILGLSVLLVTGVVTWKECLAEAVAWDTLTWFAALIAMAGYLNKYGLISWFSQTVVKFVGGLGLSWQLSFGILVLLYFYSHYFFASGAAHIGAMFTAFLSVASALGTPPYFGAIVLSFLSNLMGGLTHYGIGSAPVFYGANYVPLAQWWGYGFLVSVVNIIIWLGAGGIWWKAIGL 906
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7335133 7346216 + CmaCh02G012480.1 Cma02g01248 288999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01248 906 CDD SANT 26 70 IPR001005 -
Cma02g01248 906 MobiDBLite consensus disorder prediction 127 150 - -
Cma02g01248 906 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 125 IPR017930 -
Cma02g01248 906 ProSiteProfiles Myb-like domain profile. 18 70 IPR001005 -
Cma02g01248 906 PANTHER DICARBOXYLATE TRANSPORTER 2.1, CHLOROPLASTIC 419 906 IPR030676 -
Cma02g01248 906 MobiDBLite consensus disorder prediction 1 24 - -
Cma02g01248 906 PANTHER DICARBOXYLATE TRANSPORTER 1, CHLOROPLASTIC 419 906 - -
Cma02g01248 906 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Cma02g01248 906 CDD SANT 78 118 IPR001005 -
Cma02g01248 906 SMART sant 22 72 IPR001005 -
Cma02g01248 906 SMART sant 75 123 IPR001005 -
Cma02g01248 906 Gene3D - 20 76 - -
Cma02g01248 906 Gene3D - 77 148 - -
Cma02g01248 906 Pfam Sodium:sulfate symporter transmembrane region 444 905 IPR001898 GO:0016020|GO:0022857|GO:0055085
Cma02g01248 906 CDD ArsB_NhaD_permease 479 901 - -
Cma02g01248 906 TIGRFAM dass: transporter, divalent anion:Na+ symporter (DASS) family 459 901 IPR001898 GO:0016020|GO:0022857|GO:0055085
Cma02g01248 906 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 70 IPR017930 -
Cma02g01248 906 SUPERFAMILY Homeodomain-like 21 117 IPR009057 -
Cma02g01248 906 Pfam Myb-like DNA-binding domain 76 119 IPR001005 -
Cma02g01248 906 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01248 Cma20g00081 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00224 Cma-Chr1:1033940 Cma02g01248 Cma-Chr2:7335133 8.92E-67 dispersed
Cma02g01248 Cma-Chr2:7335133 Cma16g00265 Cma-Chr16:1245458 1.23E-144 dispersed
Cma20g00081 Cma-Chr20:351263 Cma02g01248 Cma-Chr2:7335133 0 transposed
Cma17g00953 Cma-Chr17:7097493 Cma02g01248 Cma-Chr2:7335133 4.76E-62 wgd
Cma02g01248 Cma-Chr2:7335133 Cma20g00080 Cma-Chr20:347735 1.85E-115 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34511 PF00939 Na_sulph_symp 4.30E-138 CL0182 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01248 - - bhj:120088316 987.638