Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01253 ATGGGATACGTGGCATGCGCTGCTGTCGATGCTTTAAAGAGGCGGTCCCCACATTTGCGCCAAGCGTTTCCCGGACTTTGCTCGTCAACTCACGACCCACGTCAACTGGGAACCTGCTTTAGCCGGTTTTGCTCGTCTCAACTCAAAGGCGTCGACTTGGAAGAATCTCGTAGTTTGAAACTGGAAGGGCCGGTTGCTGGTGGAAGAGTAGCTGGAACTGAAGTCGGGTCCCGCAATTCCCACCGTCTTCTTCCTGAATCCAGCGCTTCGGATTTCCTCAATTTTCTCTCCAATCTCTTCCCTTTGATGCCGTGCAAAGTAGGTTGGAATGTCAGTCGTCTAGAAAACAAGCTGAATATTGAAGTGAACTCAAAGTCTAAAAGTGTGAATCAAGTGGAATCTGAACCACCGAATATGCAGCAGACTGGTAGTTATTCTGAACCTTGGTGGCGTAGTATTGGGTACAATCCTATCTATCCGTCAGCAACAGGAGGGAATGTGTCCAATTCACCATCACTGGAATGTACTAATGGTGCCTCAGAATCTAATGATGGCCAGTCAATGTCAAATGCTGATTTGAATGAAGATGATGATGATGATGACACCACGAAAGAAACGCAAGCTGCAAGTTATGGGCAAAGTCAGCACAACAATCAGCATGCTGTTTCTACTGCACCTAGAGTGCATGGAGGATGTATCACACAACCTCCTCAGCTTGAACTTGTAGGCCACTCTATTGCATGTGCATCAAACCAATATCAGGATCCTTATTATGCTGGACTTATGGCTGCATATGGGCATCAACCTATGGGTTATCCTCCTTTTATTGGGATGCCACATGCTAGAATGGCTTTGCCCCTTGAGGTGGCACAGGAGCCAGTTTTTGTGAATGCCAAACAGTATCAAGGGATTCTAAGGCGAAGACAAGCACGTGCTAAAGCAGAGGTTGAGAACAAACTGATAAAAGTTAGAAAGCCATATCTTCATGAATCTCGTCACCAGCATGCCATGAGACGGGCGAGGGGTACCGGTGGACGTTTTGCCAAGAAAAATGAAGCTAAATCTTTGAGCTCTACTATGAAGAACAAGGAATCTGGTTCTGGTCAAGCTATATCGTCTAGTTCGTCTGGTTCTGAGGCTGTGCCTGGTGCCTTGACTGAAACCTGGAATTCCTCGAATAGTCAACAAGAAGCAAGAGCCCAGTTGCATGAGTCATATGAAGCTCGTAGTTATGTGAATGGCAATAGCCATTTTCATAATTACAGTAGCTTCCAAGCTTCTTCATATGCTTTACTCTCTGGCGAGAGAGGTGAAGATGGAGACTGCTCGGGACAGCAACGAGGAAGTATCTCAGAAAATCAGGCCGCACAGAGGCGTCTTGCAATCAACGTTCCCATGCGGCTGTGGTTAATCAGCAGCTCTCAGATGCTTTCCCTTCACTCCCTCCTCAATCAAAACCATCGCCCGCCATTGTTAGCCACCAAGAAAAGCTCCGATGTTTTGAAGACAAAGAAAGCTCACCCATTTCCTTCCCCTGCTTCTCGTCGCTGTATTGTGTGTTCAAAGGAGACCGACTCACAGCAGTTCGAGGTCGACCCAGACAAGGCCAGGCAGGCCCTTCAAGAGCTCGACCAGCAGCTTCAATCCTTCTCCAAAAAACGAGCCACCCCTCCCAAGAAGAAAGTTGTTGAAGGCACAAAGCTTCCAAGAGATCAAATGAGAGGAGAAATGGCAGAACTTTCAGAGTCCTTTTTAGCAAACTCTGCTGTTGTTCTCTTCATCTTCTCGATTTTCTACAATGTGCTGTTCTATGCAGTCATAAAGCCCTCCATTGATACTCCACTGCCAAGCTCAACCAGTTCTGAGACACAAGCCACTGAGCCACCAGTCTTGCAGCTGCTACCACCTTCATCTTTGTTCATATCCCCCTCACTTCTTAGCTAA 1944 47.12 MGYVACAAVDALKRRSPHLRQAFPGLCSSTHDPRQLGTCFSRFCSSQLKGVDLEESRSLKLEGPVAGGRVAGTEVGSRNSHRLLPESSASDFLNFLSNLFPLMPCKVGWNVSRLENKLNIEVNSKSKSVNQVESEPPNMQQTGSYSEPWWRSIGYNPIYPSATGGNVSNSPSLECTNGASESNDGQSMSNADLNEDDDDDDTTKETQAASYGQSQHNNQHAVSTAPRVHGGCITQPPQLELVGHSIACASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKNKESGSGQAISSSSSGSEAVPGALTETWNSSNSQQEARAQLHESYEARSYVNGNSHFHNYSSFQASSYALLSGERGEDGDCSGQQRGSISENQAAQRRLAINVPMRLWLISSSQMLSLHSLLNQNHRPPLLATKKSSDVLKTKKAHPFPSPASRRCIVCSKETDSQQFEVDPDKARQALQELDQQLQSFSKKRATPPKKKVVEGTKLPRDQMRGEMAELSESFLANSAVVLFIFSIFYNVLFYAVIKPSIDTPLPSSTSSETQATEPPVLQLLPPSSLFISPSLLS 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7361987 7368814 + CmaCh02G012530.1 Cma02g01253 289004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01253 647 Gene3D - 290 352 - -
Cma02g01253 647 MobiDBLite consensus disorder prediction 330 344 - -
Cma02g01253 647 MobiDBLite consensus disorder prediction 125 147 - -
Cma02g01253 647 MobiDBLite consensus disorder prediction 352 401 - -
Cma02g01253 647 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 152 454 - -
Cma02g01253 647 MobiDBLite consensus disorder prediction 165 229 - -
Cma02g01253 647 SMART cbf3 289 350 IPR001289 GO:0003700|GO:0006355
Cma02g01253 647 MobiDBLite consensus disorder prediction 206 224 - -
Cma02g01253 647 MobiDBLite consensus disorder prediction 165 190 - -
Cma02g01253 647 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 292 347 IPR001289 GO:0003700|GO:0006355
Cma02g01253 647 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 152 454 IPR001289 GO:0003700|GO:0006355
Cma02g01253 647 MobiDBLite consensus disorder prediction 330 402 - -
Cma02g01253 647 ProSiteProfiles NF-YA/HAP2 family profile. 290 350 IPR001289 GO:0003700|GO:0006355
Cma02g01253 647 ProSitePatterns NF-YA/HAP2 subunit signature. 295 315 IPR018362 GO:0003677|GO:0016602
Cma02g01253 647 PRINTS CCAAT-binding transcription factor subunit B signature 324 347 IPR001289 GO:0003700|GO:0006355
Cma02g01253 647 PRINTS CCAAT-binding transcription factor subunit B signature 293 315 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01253 Cma-Chr2:7361987 Cma03g01447 Cma-Chr3:9056189 3.16E-32 dispersed
Cma10g00928 Cma-Chr10:4642922 Cma02g01253 Cma-Chr2:7361987 3.34E-97 wgd
Cma11g00848 Cma-Chr11:4281494 Cma02g01253 Cma-Chr2:7361987 1.31E-98 wgd
Cma17g00955 Cma-Chr17:7113927 Cma02g01253 Cma-Chr2:7361987 1.26E-46 wgd
Cma02g01253 Cma-Chr2:7361987 Cma20g00089 Cma-Chr20:381712 0 wgd
Cma02g01253 Cma-Chr2:7361987 Cma08g00526 Cma-Chr8:3030325 8.57E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34512 PF02045 CBFB_NFYA 5.80E-26 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01253 K08064 - csv:101212961 551.977