Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01253 ATGGGATACGTGGCATGCGCTGCTGTCGATGCTTTAAAGAGGCGGTCCCCACATTTGCGCCAAGCGTTTCCCGGACTTTGCTCGTCAACTCACGACCCACGTCAACTGGGAACCTGCTTTAGCCGGTTTTGCTCGTCTCAACTCAAAGGCGTCGACTTGGAAGAATCTCGTAGTTTGAAACTGGAAGGGCCGGTTGCTGGTGGAAGAGTAGCTGGAACTGAAGTCGGGTCCCGCAATTCCCACCGTCTTCTTCCTGAATCCAGCGCTTCGGATTTCCTCAATTTTCTCTCCAATCTCTTCCCTTTGATGCCGTGCAAAGTAGGTTGGAATGTCAGTCGTCTAGAAAACAAGCTGAATATTGAAGTGAACTCAAAGTCTAAAAGTGTGAATCAAGTGGAATCTGAACCACCGAATATGCAGCAGACTGGTAGTTATTCTGAACCTTGGTGGCGTAGTATTGGGTACAATCCTATCTATCCGTCAGCAACAGGAGGGAATGTGTCCAATTCACCATCACTGGAATGTACTAATGGTGCCTCAGAATCTAATGATGGCCAGTCAATGTCAAATGCTGATTTGAATGAAGATGATGATGATGATGACACCACGAAAGAAACGCAAGCTGCAAGTTATGGGCAAAGTCAGCACAACAATCAGCATGCTGTTTCTACTGCACCTAGAGTGCATGGAGGATGTATCACACAACCTCCTCAGCTTGAACTTGTAGGCCACTCTATTGCATGTGCATCAAACCAATATCAGGATCCTTATTATGCTGGACTTATGGCTGCATATGGGCATCAACCTATGGGTTATCCTCCTTTTATTGGGATGCCACATGCTAGAATGGCTTTGCCCCTTGAGGTGGCACAGGAGCCAGTTTTTGTGAATGCCAAACAGTATCAAGGGATTCTAAGGCGAAGACAAGCACGTGCTAAAGCAGAGGTTGAGAACAAACTGATAAAAGTTAGAAAGCCATATCTTCATGAATCTCGTCACCAGCATGCCATGAGACGGGCGAGGGGTACCGGTGGACGTTTTGCCAAGAAAAATGAAGCTAAATCTTTGAGCTCTACTATGAAGAACAAGGAATCTGGTTCTGGTCAAGCTATATCGTCTAGTTCGTCTGGTTCTGAGGCTGTGCCTGGTGCCTTGACTGAAACCTGGAATTCCTCGAATAGTCAACAAGAAGCAAGAGCCCAGTTGCATGAGTCATATGAAGCTCGTAGTTATGTGAATGGCAATAGCCATTTTCATAATTACAGTAGCTTCCAAGCTTCTTCATATGCTTTACTCTCTGGCGAGAGAGGTGAAGATGGAGACTGCTCGGGACAGCAACGAGGAAGTATCTCAGAAAATCAGGCCGCACAGAGGCGTCTTGCAATCAACGTTCCCATGCGGCTGTGGTTAATCAGCAGCTCTCAGATGCTTTCCCTTCACTCCCTCCTCAATCAAAACCATCGCCCGCCATTGTTAGCCACCAAGAAAAGCTCCGATGTTTTGAAGACAAAGAAAGCTCACCCATTTCCTTCCCCTGCTTCTCGTCGCTGTATTGTGTGTTCAAAGGAGACCGACTCACAGCAGTTCGAGGTCGACCCAGACAAGGCCAGGCAGGCCCTTCAAGAGCTCGACCAGCAGCTTCAATCCTTCTCCAAAAAACGAGCCACCCCTCCCAAGAAGAAAGTTGTTGAAGGCACAAAGCTTCCAAGAGATCAAATGAGAGGAGAAATGGCAGAACTTTCAGAGTCCTTTTTAGCAAACTCTGCTGTTGTTCTCTTCATCTTCTCGATTTTCTACAATGTGCTGTTCTATGCAGTCATAAAGCCCTCCATTGATACTCCACTGCCAAGCTCAACCAGTTCTGAGACACAAGCCACTGAGCCACCAGTCTTGCAGCTGCTACCACCTTCATCTTTGTTCATATCCCCCTCACTTCTTAGCTAA 1944 47.12 MGYVACAAVDALKRRSPHLRQAFPGLCSSTHDPRQLGTCFSRFCSSQLKGVDLEESRSLKLEGPVAGGRVAGTEVGSRNSHRLLPESSASDFLNFLSNLFPLMPCKVGWNVSRLENKLNIEVNSKSKSVNQVESEPPNMQQTGSYSEPWWRSIGYNPIYPSATGGNVSNSPSLECTNGASESNDGQSMSNADLNEDDDDDDTTKETQAASYGQSQHNNQHAVSTAPRVHGGCITQPPQLELVGHSIACASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKNKESGSGQAISSSSSGSEAVPGALTETWNSSNSQQEARAQLHESYEARSYVNGNSHFHNYSSFQASSYALLSGERGEDGDCSGQQRGSISENQAAQRRLAINVPMRLWLISSSQMLSLHSLLNQNHRPPLLATKKSSDVLKTKKAHPFPSPASRRCIVCSKETDSQQFEVDPDKARQALQELDQQLQSFSKKRATPPKKKVVEGTKLPRDQMRGEMAELSESFLANSAVVLFIFSIFYNVLFYAVIKPSIDTPLPSSTSSETQATEPPVLQLLPPSSLFISPSLLS 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7361987 7368814 + CmaCh02G012530.1 Cma02g01253 289004

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01253 647 Gene3D - 290 352 - -
Cma02g01253 647 MobiDBLite consensus disorder prediction 330 344 - -
Cma02g01253 647 MobiDBLite consensus disorder prediction 125 147 - -
Cma02g01253 647 MobiDBLite consensus disorder prediction 352 401 - -
Cma02g01253 647 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 152 454 - -
Cma02g01253 647 MobiDBLite consensus disorder prediction 165 229 - -
Cma02g01253 647 SMART cbf3 289 350 IPR001289 GO:0003700|GO:0006355
Cma02g01253 647 MobiDBLite consensus disorder prediction 206 224 - -
Cma02g01253 647 MobiDBLite consensus disorder prediction 165 190 - -
Cma02g01253 647 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 292 347 IPR001289 GO:0003700|GO:0006355
Cma02g01253 647 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 152 454 IPR001289 GO:0003700|GO:0006355
Cma02g01253 647 MobiDBLite consensus disorder prediction 330 402 - -
Cma02g01253 647 ProSiteProfiles NF-YA/HAP2 family profile. 290 350 IPR001289 GO:0003700|GO:0006355
Cma02g01253 647 ProSitePatterns NF-YA/HAP2 subunit signature. 295 315 IPR018362 GO:0003677|GO:0016602
Cma02g01253 647 PRINTS CCAAT-binding transcription factor subunit B signature 324 347 IPR001289 GO:0003700|GO:0006355
Cma02g01253 647 PRINTS CCAAT-binding transcription factor subunit B signature 293 315 IPR001289 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01253 K08064 NFYA, HAP2; nuclear transcription factor Y, alpha - csv:101212961 551.977
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01253 Cma-Chr2:7361987 Cma03g01447 Cma-Chr3:9056189 3.16E-32 dispersed
Cma10g00928 Cma-Chr10:4642922 Cma02g01253 Cma-Chr2:7361987 3.34E-97 wgd
Cma11g00848 Cma-Chr11:4281494 Cma02g01253 Cma-Chr2:7361987 1.31E-98 wgd
Cma17g00955 Cma-Chr17:7113927 Cma02g01253 Cma-Chr2:7361987 1.26E-46 wgd
Cma02g01253 Cma-Chr2:7361987 Cma20g00089 Cma-Chr20:381712 0 wgd
Cma02g01253 Cma-Chr2:7361987 Cma08g00526 Cma-Chr8:3030325 8.57E-47 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g218 . . . . Bpe01g00320 . . . . . . . . . . . . . . . . . . . Cla02g02244 Cam02g2392 . Cco02g2468 Clacu02g2362 Cmu02g2296 Cre02g2616 . . . . . Csa06g02548 Chy05g00138 Cme05g00166 . Blo14g00286 . . . . . Bma11g00294 Sed01g3288 Cmo02g01294 . Cma02g01253 . Car02g01044 . . . Bhi10g00301 Tan07g0754 Cmetu05g0578 . Hepe08g0131 . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma20g00089 CCT,CST,ECH 1 272 CCAAT-HAP2 Transcription Factor Family AT5G12840 50.7 2.1e-55 213.4
Cma02g01253 . 139 392 CCAAT-HAP2 Transcription Factor Family AT5G12840 51.9 1.7e-54 210.3
Cma10g00928 CCT,ECH 23 237 CCAAT-HAP2 Transcription Factor Family AT5G12840 51.2 3.2e-48 189.5
Cma02g01253 . 228 462 CCAAT-HAP2 Transcription Factor Family AT3G20910 52.5 1.9e-49 193.7
Cma20g00089 CCT,CST,ECH 105 343 CCAAT-HAP2 Transcription Factor Family AT3G20910 50.2 6.7e-47 185.3
Cma11g00848 CCT,CST,ECH 1 244 CCAAT-HAP2 Transcription Factor Family AT3G20910 51.0 3.3e-46 183.0
Cma10g00928 CCT,ECH 1 233 CCAAT-HAP2 Transcription Factor Family AT3G20910 51.7 6.2e-45 178.7
Cma07g00062 . 58 260 CCAAT-HAP2 Transcription Factor Family AT1G30500 53.7 8.5e-48 187.6
Cma03g01447 . 42 221 CCAAT-HAP2 Transcription Factor Family AT1G30500 54.4 5.3e-42 168.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014814 0 1 1 1 1 0 1 0 0 1 1 0 1 1 1 1 0 1 0 0 1 1 1 0 0 0 0 1 1 1 18
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34512 PF02045 CBFB_NFYA 5.80E-26 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g01253 Cma_Chr02 FPKM 3.019547 3.563643 17.851137 18.923862 32.688789 29.067316 32.149906 26.079094 24.594769 23.646654