Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01273 ATGTGGTCCGCCGCCGCTGCTTCTCAGAGGTCTCTTAATTACGGCCTTGGATCAGAAATGAGCATGGTTGGCCTCCGAGATGTGTTTGTCGTTGCACCGGCTTCCTCTTTCAACCCTAATCCTCACCCCCACGACAATAACCTCCTCTCAGATCCTCATTCCCTCGCTGTCTCTAACCCCGCCACCGCTCTCGGCGTCGGCGTTATTCCCTTACTCACTGCCGGTCCCTGCCTCGGCGTTGAGGAAGATAATCTATTGAGTAATCGGAGTAGTAACAGAGGCGGAGGGATTCAGCTATGGCAACAGAATCATTATTTGAAGAAAATGCCGTCGTCTCTGGATAATCACCTCCATAATCCCTCCGCCGCTAACAATGGACTTATCGACGACGGAATCGGTATCACCGGCGGCTTAGCTTCGTCGTCATCGGCGACGACCACGTGTCAGGACTGTGGTAACCAAGCGAAGAAGGATTGTAGTCATAGACGCTGCAGAACTTGTTGTCGAAGCCGAGGGTTCGATTGCACTACTCACGTGAAGAGCACGTGGGTTCCTGCAGCGCGACGGCGAGAGCGGCAACTAATGGGGGTAGCCGCTAACGCCGCTGCTGGTTCATCCGGCTCCACCTCCGGCGCGAAGAAACCCCGACTCATCGCCTCGCAAACCACTTCTCGGACTTCCACTTCCAATACGACGCCGCCGAGAAGCCTCGATACGAGCTCCAGCCACCAAGATGCTGGTTTTCCTGAGGCATTACCAGGGCAAGTACGTGCACCGGCGGTTTTCAAGTGCGTGAGAGTCACGGCGGTGGACGACGGCGACGACGAATACGCTTATCAAGCGGTAGTTAAAATCGGCGGACATATCTTCAAAGGATTTTTGTACGATCAAGGCGTTGAACCAGGAGATGAGTTTCCGAATGTTTCGGAATTGCATTTAGGTGACGGCGGTGGATTAACCAGAAACAATCGGAATGGCGTTTCTTCTTCTTCTCCGCTTGTTGATCCATCGGACGTTTACAATGCTGCCGCCACTGGCGGCGGCGCTCCATGTTTTCTCGGCGGTTCAAACTACGGTAATCAAATCAGCTGA 1092 53.85 MWSAAAASQRSLNYGLGSEMSMVGLRDVFVVAPASSFNPNPHPHDNNLLSDPHSLAVSNPATALGVGVIPLLTAGPCLGVEEDNLLSNRSSNRGGGIQLWQQNHYLKKMPSSLDNHLHNPSAANNGLIDDGIGITGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCTTHVKSTWVPAARRRERQLMGVAANAAAGSSGSTSGAKKPRLIASQTTSRTSTSNTTPPRSLDTSSSHQDAGFPEALPGQVRAPAVFKCVRVTAVDDGDDEYAYQAVVKIGGHIFKGFLYDQGVEPGDEFPNVSELHLGDGGGLTRNNRNGVSSSSPLVDPSDVYNAAATGGGAPCFLGGSNYGNQIS 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7475680 7477836 + CmaCh02G012730.1 Cma02g01273 289024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01273 363 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 22 362 IPR007818 GO:0003700|GO:0006355
Cma02g01273 363 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 147 189 IPR006510 -
Cma02g01273 363 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 22 362 - -
Cma02g01273 363 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 252 299 IPR006511 -
Cma02g01273 363 MobiDBLite consensus disorder prediction 198 252 - -
Cma02g01273 363 Pfam Domain of unknown function (DUF702) 145 300 - -
Cma02g01273 363 MobiDBLite consensus disorder prediction 202 246 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01273 Cma20g00108 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01273 Cma-Chr2:7475680 Cma04g01327 Cma-Chr4:6768933 1.16E-71 dispersed
Cma11g00884 Cma-Chr11:4482907 Cma02g01273 Cma-Chr2:7475680 9.68E-59 wgd
Cma02g01273 Cma-Chr2:7475680 Cma20g00108 Cma-Chr20:500296 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34515 PF05142 DUF702 3.00E-62 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01273 - - cpep:111777082 549.666