Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01275 ATGGCTTCTTCGGGAATCTCTACTGAAAGCGCCGAATTGTCTGATGCGGTTCAAATACTGGAAGTTTGCAACCAGATTGAAATGGGAAAGAAGGTAGAGATTCACGGAACGGGGCATGGGAGTCATGATGGGGTTTGTGCAATTTGCTTAAATAAGATAGCTCTCCAAGAAACTGCCTTAGTGAGGGGTTGCGAGCATGCCTATTGTGCGACTTGCATCCTTCGATGGGCCTCATATAATAAGAATCCGACGTGTCCACAATGTAAACATCCATTTGAGTTCCTGATTGTGCATCGTTCTCTTGATGGGAGCGTCCATGACTTTATGTTTGAGGAGAGCGTATGCTTGCTTCTGAGAGCTTCATGGTATGTACCTCTGATCGTTGAAGATCGGGAAGAAACCTATGAAGATCCTGATGAGTACTACCCTTATGAGGATGACGACGAAGAGTTTGAGGAAGCTTACCTGGGTGCATCGTCGAGTCTCCGCATCGGCAATCGAAGGTGGGGAGACAATGGATATGTGAGGGGAGGTCGACAAGAAGCACGACCAGTTATTAGGTCAACTGTTCCAGTGCATGCAGGAGCTAGTTCATCACGTGAGCCTATAAAAAAAGATGCTTCCAAAGATAAAACAGGTCGACGAGCTAAAAGGGCCTTGAAACGGGAAGCTGCTGATAAAGCTGCAGCAGCTAAACATCAGGAACATCTAGCTAGGTTTGGGCGAAAGTGA 732 46.72 MASSGISTESAELSDAVQILEVCNQIEMGKKVEIHGTGHGSHDGVCAICLNKIALQETALVRGCEHAYCATCILRWASYNKNPTCPQCKHPFEFLIVHRSLDGSVHDFMFEESVCLLLRASWYVPLIVEDREETYEDPDEYYPYEDDDEEFEEAYLGASSSLRIGNRRWGDNGYVRGGRQEARPVIRSTVPVHAGASSSREPIKKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFGRK 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7483171 7486332 + CmaCh02G012750.1 Cma02g01275 289026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01275 243 SUPERFAMILY RING/U-box 40 96 - -
Cma02g01275 243 ProSiteProfiles Zinc finger RING-type profile. 46 89 IPR001841 -
Cma02g01275 243 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 11 243 - -
Cma02g01275 243 SMART ring_2 46 88 IPR001841 -
Cma02g01275 243 Pfam Ring finger domain 46 89 IPR001841 -
Cma02g01275 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 112 IPR013083 -
Cma02g01275 243 MobiDBLite consensus disorder prediction 199 243 - -
Cma02g01275 243 ProSitePatterns Zinc finger RING-type signature. 64 73 IPR017907 -
Cma02g01275 243 MobiDBLite consensus disorder prediction 190 243 - -
Cma02g01275 243 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 11 243 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01275 Cma20g00110 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01275 Cma-Chr2:7483171 Cma20g00110 Cma-Chr20:514216 1.01E-141 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01275 - - mcha:111020607 375.17