Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma02g01275 | ATGGCTTCTTCGGGAATCTCTACTGAAAGCGCCGAATTGTCTGATGCGGTTCAAATACTGGAAGTTTGCAACCAGATTGAAATGGGAAAGAAGGTAGAGATTCACGGAACGGGGCATGGGAGTCATGATGGGGTTTGTGCAATTTGCTTAAATAAGATAGCTCTCCAAGAAACTGCCTTAGTGAGGGGTTGCGAGCATGCCTATTGTGCGACTTGCATCCTTCGATGGGCCTCATATAATAAGAATCCGACGTGTCCACAATGTAAACATCCATTTGAGTTCCTGATTGTGCATCGTTCTCTTGATGGGAGCGTCCATGACTTTATGTTTGAGGAGAGCGTATGCTTGCTTCTGAGAGCTTCATGGTATGTACCTCTGATCGTTGAAGATCGGGAAGAAACCTATGAAGATCCTGATGAGTACTACCCTTATGAGGATGACGACGAAGAGTTTGAGGAAGCTTACCTGGGTGCATCGTCGAGTCTCCGCATCGGCAATCGAAGGTGGGGAGACAATGGATATGTGAGGGGAGGTCGACAAGAAGCACGACCAGTTATTAGGTCAACTGTTCCAGTGCATGCAGGAGCTAGTTCATCACGTGAGCCTATAAAAAAAGATGCTTCCAAAGATAAAACAGGTCGACGAGCTAAAAGGGCCTTGAAACGGGAAGCTGCTGATAAAGCTGCAGCAGCTAAACATCAGGAACATCTAGCTAGGTTTGGGCGAAAGTGA | 732 | 46.72 | MASSGISTESAELSDAVQILEVCNQIEMGKKVEIHGTGHGSHDGVCAICLNKIALQETALVRGCEHAYCATCILRWASYNKNPTCPQCKHPFEFLIVHRSLDGSVHDFMFEESVCLLLRASWYVPLIVEDREETYEDPDEYYPYEDDDEEFEEAYLGASSSLRIGNRRWGDNGYVRGGRQEARPVIRSTVPVHAGASSSREPIKKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFGRK | 243 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 7483171 | 7486332 | + | CmaCh02G012750.1 | Cma02g01275 | 289026 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma02g01275 | 243 | SUPERFAMILY | RING/U-box | 40 | 96 | - | - | |
Cma02g01275 | 243 | ProSiteProfiles | Zinc finger RING-type profile. | 46 | 89 | IPR001841 | - | |
Cma02g01275 | 243 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 11 | 243 | - | - | |
Cma02g01275 | 243 | SMART | ring_2 | 46 | 88 | IPR001841 | - | |
Cma02g01275 | 243 | Pfam | Ring finger domain | 46 | 89 | IPR001841 | - | |
Cma02g01275 | 243 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 29 | 112 | IPR013083 | - | |
Cma02g01275 | 243 | MobiDBLite | consensus disorder prediction | 199 | 243 | - | - | |
Cma02g01275 | 243 | ProSitePatterns | Zinc finger RING-type signature. | 64 | 73 | IPR017907 | - | |
Cma02g01275 | 243 | MobiDBLite | consensus disorder prediction | 190 | 243 | - | - | |
Cma02g01275 | 243 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 11 | 243 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma02g01275 | Cma20g00110 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g01275 | Cma-Chr2:7483171 | Cma20g00110 | Cma-Chr20:514216 | 1.01E-141 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma02g01275 | - | - | mcha:111020607 | 375.17 |