Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01292 ATGGCGGCTCGAGCTGTTGCTCCGCAGCAACCACTACGAATCAGAGGTGAAGGTAAGCCGAAGATGGTAGAGGCTGAAGGAAGAACAAGGCGAGTTCTTCAAGATATAGGGAATCTGGTGCCTGATCGAGCCGTGGAAGGGAAACCCGGCCCTCAACCTGCCGAGAAGAACAAGAAAGCGATCACTCAAAAGCTGGGTGGGGGAGTAGGAAAGGGAGGCGATGTGGCGGCGAAGGCTACAGTAATTGAGAAATGCAAAGCTGAGAAACCTAAGACTGTACTCAGCTCCGCCGATAGGAGACATATAATCAACATCAGCGATAGTAAATCAAGGGATAAGAATAAGAGAACTCTGACTTCAACTCTTAGTGCCAGAAGCAAGGCTGCCTGTGGGCTCAACAATAATCCACTGGATTCAGTAGCTAATATTGATGAAGCAGATGCTAACAATGAATTGGCAGTTGTTGAATACATCGATGATATGTACAAGTTCTACAAGCTTGCAGAAGATGAAAACACAGTGACAGATTACATGGGAACACAGCCAGATTTGAATGCCAAGATGAGGTCCATCCTCATAGATTGGTTGATTGAAGTTCATCGCAAGTTTGAACTAATGCCAGAAACCCTCTACCTCACTGTCAACATTGTAGACCGATTCCTTTCCTTGAAGACTGTGCCAAGGAGAGAGCTTCAATTAGTAGGAGTCAGCTCTATGCTGATAGCATGCAAATATGAAGAGATTTGGGCCCCAGAGGTCAATGATTTTGTGAGTATATCTGCAAATACTTACCAGAGAGAACAGATTTTGGTGATGGAGAAAGTAATCTTAGGGAAGTTGGAATGGCTTCTAACAGTTCCTACACCCTATGTTTTTCTTGTTCGATACGTCAAGGCCTCTGAGCCGTCCGATGAGGAGATGGAGAACATGGTGTTTTTTCTAGCTGAGCTTGGTCTGATGAACTACCCCATAGCCATATCATACAGCCCATCAATGATTGCTTCAGCGGCTGTTTATGCTGCTCGACGCACACTGGATAAGAGCCATCTCTGGACAACAACATTGCAGCACCATACAGGCTATGTTGAAGATGAGTTGAAGGAGTGTGCAGAACTCCTTATGAACTTGCACCGTGGAGCTGCAGATAGCAAGCTGAAGGCTGTGTATAGGAAATATACGAGCCCAGATCGTAGTGCAGTTGCTCTGTTTCCTCCAGCTAGAAGTGTCAGCCCAGATCGCAGTGTAGAAGTATGA 1254 45.93 MAARAVAPQQPLRIRGEGKPKMVEAEGRTRRVLQDIGNLVPDRAVEGKPGPQPAEKNKKAITQKLGGGVGKGGDVAAKATVIEKCKAEKPKTVLSSADRRHIINISDSKSRDKNKRTLTSTLSARSKAACGLNNNPLDSVANIDEADANNELAVVEYIDDMYKFYKLAEDENTVTDYMGTQPDLNAKMRSILIDWLIEVHRKFELMPETLYLTVNIVDRFLSLKTVPRRELQLVGVSSMLIACKYEEIWAPEVNDFVSISANTYQREQILVMEKVILGKLEWLLTVPTPYVFLVRYVKASEPSDEEMENMVFFLAELGLMNYPIAISYSPSMIASAAVYAARRTLDKSHLWTTTLQHHTGYVEDELKECAELLMNLHRGAADSKLKAVYRKYTSPDRSAVALFPPARSVSPDRSVEV 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7574896 7577177 - CmaCh02G012920.1 Cma02g01292 289043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01292 417 Gene3D - 174 285 - -
Cma02g01292 417 PIRSF Cyclin_A_B_D_E 2 416 IPR039361 -
Cma02g01292 417 PANTHER CYCLIN-B1-4 23 408 - -
Cma02g01292 417 SMART Cyclin_C_2 287 406 IPR004367 -
Cma02g01292 417 Pfam Cyclin, N-terminal domain 160 284 IPR006671 -
Cma02g01292 417 ProSitePatterns Cyclins signature. 189 220 IPR006671 -
Cma02g01292 417 SUPERFAMILY Cyclin-like 149 282 IPR036915 -
Cma02g01292 417 CDD CYCLIN 188 277 IPR013763 -
Cma02g01292 417 Pfam Cyclin, C-terminal domain 287 405 IPR004367 -
Cma02g01292 417 SMART cyclin_7 194 278 IPR013763 -
Cma02g01292 417 SMART cyclin_7 291 375 IPR013763 -
Cma02g01292 417 SUPERFAMILY Cyclin-like 288 407 IPR036915 -
Cma02g01292 417 CDD CYCLIN 285 374 IPR013763 -
Cma02g01292 417 MobiDBLite consensus disorder prediction 1 22 - -
Cma02g01292 417 Gene3D - 160 401 - -
Cma02g01292 417 PANTHER CYCLINS 23 408 IPR039361 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01292 Cma-Chr2:7574896 Cma07g01100 Cma-Chr7:5953674 1.44E-140 dispersed
Cma02g01292 Cma-Chr2:7574896 Cma01g02011 Cma-Chr1:12878049 7.48E-86 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01292 K21777 - csv:101222873 665.996