Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01296 ATGGCGGATATTAGAAAATGGTTCATGAAAGCGCACGATAAAGACAATGGCAGTGCGTCAAAGCATGCAAAACCTGATTCAAGCACTACTGAGAAATCCGCCGCAGCTGAACTACAGTCCGGAAAAGCAGAGCTAAGTGGTGGGGAAAGTACTGGCAGAAGGATAACTAGCAAGTATTTTGCCTCAGAAAAGCAGAAGTCTAAGGATACAACAGAAACAGAGGAACTCCCGATCAAACGAAAGTCTCCACAGGATGCTAAGGAGTCACCAGCCAAAAGAAGGTCCCAAAAGGATAGCAAGGAATCATTGAAAGTTCCACCCCTACAAAAATTAAACAAAATTGATGACAATGATGATGATGATGCTGTTATTTCAAGTTCTAGAAAGAACTTGTCTGATGTCACTCCCAATAAAAAGTTGAAGAGTGGTTCTGGAAAGGGAATTACACAGAAACCGGTAAAAATTGAAGAGAGTGATGATGAGGAAGCTGAGGGCACTGAGTCTTCTCGGAAGCAGCCTAGTGGAAGGGGTAGGGGGGGAAGAGGTTCATCTGCTGCAACCGTTGGTGGTAGAGGCAGAGGTGGTGGGCGGGGTGGATTTATGAATTTTGGGGAAAGGAAAGATCCTCCACACAAAGGAGAAAAGGAAGTCCCTGAAGGAGCTCCTGACTGTTTAGCCGGTTTAACTTTTGTAATCAGTGGAACCCTTGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATAAAACGCCATGGTGGTAGAATAACTGGATCCATCAGCAAAAAAACAAATTATCTACTATGTGATGAAGATATTGGTGGCCGAAAATCTTCCAAAGCAAAAGAGCTGGGAACTGCTTTTCTCACTGAGGATGGCTTATTTGACATTATCCGTGCATCAGGCACAAAAGCTCCTCCAAGGCAAGATTCTAAAAAATCTGTGGTTAAGTCCGTGGAATCTCCAACAGGGAAAAGTTCCCTGAAAGTACAAGCGAAGACATGCAAAGATTTGTCTGCTGGTGCTTCACCTGCTAAGCAAAAACGCCGAACAGTTGAATTTTCTTCCCTAACATGGACAGAAAAATATAAGCCAAAGGTTCCAAATGACATTATAGGGAATCAGTCACTGGTCAAACAACTTCATGATTGGTTGGCACATTGGAACGAGAACTTCCTTGATGGTGGAAGCAAAAAGAAGGGTAAAAAGCTCAATGATTCTGGTGCCAAAAAAGCAATCTTGTTATGTGGAGGTCCTGGCATAGGTAAAACTACATCGGCTAAGTTGGTCAGCCAGATGCTTGGTTATGAGGCTATAGAGGTAAATGCCAGTGACAATCGGGGTAAATCAGATGCAAAAATTCAAAAGGGAATCAGCGGAAGCAATGCAAATAGTATAAAGGAGCTTATCAGCAATTCATCTTTGCATTTCAGAACGGATCAGCCAAAACATCCCAAAACTGTGTTGATTATGGATGAAGTAGATGGAATGTCTGCTGGAGATAGGGGTGGAGTCGCTGATCTTATTGCAAGCATTAAAAGCTCCAAAATTCCAATTATCTGCATCTGTAATGACCGCTACAGCCAGAAGTTGAAAAGCCTTGTGAACTATTGTCTGATTCTCAGTTTTAGAAAACCTACAAAACAACAGATGGCAAAAAGATTGAGTCAAGTTGCAAATGCAGAAGGACTTCAAGTTAATGAGATTGCTCTTGAGGAACTTGCAGAAAGAGTGAATGGGGATATACGTATGGCACTAAATCAGTTGCAGTACCTGAGTCTGTCAATGTCTGTTATTAAATATGATGATATTCGCCAACGACTTCTGGGCAGTATGAAAGATGAAGACATCTCGCCGTTCACTGCTGTTGATAAGCTGTTTGGTTTTAATTCTGGGAAGTTAAGGATGGATGAACGGATAGACATCAGTATGAGTGATATGGATCTAGTCCCTCTTCTTATTCAGGAAAATTATATTAATTATAGACCAAGCTCTGTTAGTAAGGATGACAATGGGATCAAACGGATGGATTTGATGGCCCGTGCAGCTGAATCTATTGCAGATGGGGATATAATCAATGTACAGATTCGAAGGCATCGACAGTGGCAACTCTCTCAAAGTAGCTCAATTGCTTCTTGTGTAATCCCAGCTTCATTATTGCATGGGCAAAGAGAAACGCTTGAGCAGGGAGAGCGTAATTTTAATAGATTTAGTGCATGGCTGGGAAAAAATTCTACTTTTGGAAAAAATATGCGGCTTTTGGAGGATTTGCATGTTCACATTCTTGCTTCTCGCGAGTCCTGTTCTAGGAGGGAACACCTACGAGTTGAGAACCTTACCCTATTTCTGAAGAGGTTGACTGAACCACTGCACACGCTGCCTAAGGATGAAGCTGTTAAAATGGTTGTAGATTTTATGAGTCTATATTCGATCAGTCAAGAGGATTTTGATACTTTTATGGAGTTGTCAAAATTTCAGGGTCGTAAGAATCCATTGGATGGCGTGGCCCCTGCTGTCAAAGCTGCTCTAACAAAGGCATATAAAGAAGCAAGAAAGACACAGATGGTGCGGACTGCAGACCTCATTACACTTCCTGGAATTAAAAAGGCCCCTAAGAAGCGAATTGCAGCAATGCTAGAGCCAGCTGAGGATACAATCGAGGGCACTGGTGGAGATACATTGGCAGAAAGTGACGATGAGAACTCTTTGGACAACGACTACGCAGAAGACTCAACAAACGCTGGGAAGAAGCTGCAACTGGAACTTCAAAACTTGAAGAAGGAAGGAATGGAAGTGCAGCTAGATTTGAAAGGTGTGGAAAATTCAAACGCCAAGAAACCTGGTGGCAGAGGAAGAGGAGGTGGTTCCCAGACTTCAGAGAAGAAAGGTGGGGGGCGAGGTTCAGGATCTGCCACAAAGAGGAAAAGATGA 2928 42.76 MADIRKWFMKAHDKDNGSASKHAKPDSSTTEKSAAAELQSGKAELSGGESTGRRITSKYFASEKQKSKDTTETEELPIKRKSPQDAKESPAKRRSQKDSKESLKVPPLQKLNKIDDNDDDDAVISSSRKNLSDVTPNKKLKSGSGKGITQKPVKIEESDDEEAEGTESSRKQPSGRGRGGRGSSAATVGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRITGSISKKTNYLLCDEDIGGRKSSKAKELGTAFLTEDGLFDIIRASGTKAPPRQDSKKSVVKSVESPTGKSSLKVQAKTCKDLSAGASPAKQKRRTVEFSSLTWTEKYKPKVPNDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKAILLCGGPGIGKTTSAKLVSQMLGYEAIEVNASDNRGKSDAKIQKGISGSNANSIKELISNSSLHFRTDQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKSSKIPIICICNDRYSQKLKSLVNYCLILSFRKPTKQQMAKRLSQVANAEGLQVNEIALEELAERVNGDIRMALNQLQYLSLSMSVIKYDDIRQRLLGSMKDEDISPFTAVDKLFGFNSGKLRMDERIDISMSDMDLVPLLIQENYINYRPSSVSKDDNGIKRMDLMARAAESIADGDIINVQIRRHRQWQLSQSSSIASCVIPASLLHGQRETLEQGERNFNRFSAWLGKNSTFGKNMRLLEDLHVHILASRESCSRREHLRVENLTLFLKRLTEPLHTLPKDEAVKMVVDFMSLYSISQEDFDTFMELSKFQGRKNPLDGVAPAVKAALTKAYKEARKTQMVRTADLITLPGIKKAPKKRIAAMLEPAEDTIEGTGGDTLAESDDENSLDNDYAEDSTNAGKKLQLELQNLKKEGMEVQLDLKGVENSNAKKPGGRGRGGGSQTSEKKGGGRGSGSATKRKR 975
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7612932 7626896 - CmaCh02G012960.1 Cma02g01296 289047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01296 975 Gene3D - 545 615 - -
Cma02g01296 975 Gene3D BRCT domain 197 299 IPR036420 -
Cma02g01296 975 CDD AAA 405 545 - -
Cma02g01296 975 PIRSF RFC1 1 945 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Cma02g01296 975 MobiDBLite consensus disorder prediction 204 219 - -
Cma02g01296 975 MobiDBLite consensus disorder prediction 152 171 - -
Cma02g01296 975 CDD BRCT_RFC1 220 298 - -
Cma02g01296 975 MobiDBLite consensus disorder prediction 1 28 - -
Cma02g01296 975 Gene3D - 617 727 - -
Cma02g01296 975 SUPERFAMILY post-AAA+ oligomerization domain-like 616 761 IPR008921 GO:0003677|GO:0006260
Cma02g01296 975 SMART AAA_5 408 546 IPR003593 -
Cma02g01296 975 CDD HLD_clamp_RFC 545 603 - -
Cma02g01296 975 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 356 605 IPR027417 -
Cma02g01296 975 PANTHER REPLICATION FACTOR C SUBUNIT 1 22 945 - -
Cma02g01296 975 Coils Coil 907 941 - -
Cma02g01296 975 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 22 945 - -
Cma02g01296 975 MobiDBLite consensus disorder prediction 932 975 - -
Cma02g01296 975 MobiDBLite consensus disorder prediction 111 126 - -
Cma02g01296 975 ProSiteProfiles BRCT domain profile. 220 298 IPR001357 -
Cma02g01296 975 MobiDBLite consensus disorder prediction 59 104 - -
Cma02g01296 975 MobiDBLite consensus disorder prediction 879 909 - -
Cma02g01296 975 Pfam Replication factor RFC1 C terminal domain 685 847 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Cma02g01296 975 SUPERFAMILY BRCT domain 220 299 IPR036420 -
Cma02g01296 975 MobiDBLite consensus disorder prediction 301 322 - -
Cma02g01296 975 SMART BRCT_7 222 300 IPR001357 -
Cma02g01296 975 MobiDBLite consensus disorder prediction 44 58 - -
Cma02g01296 975 Pfam ATPase family associated with various cellular activities (AAA) 412 524 IPR003959 GO:0005524|GO:0016887
Cma02g01296 975 Gene3D - 356 544 IPR027417 -
Cma02g01296 975 Pfam BRCA1 C Terminus (BRCT) domain 222 297 IPR001357 -
Cma02g01296 975 MobiDBLite consensus disorder prediction 127 144 - -
Cma02g01296 975 MobiDBLite consensus disorder prediction 1 221 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01392 Cma-Chr1:9858437 Cma02g01296 Cma-Chr2:7612932 3.24E-07 dispersed
Cma02g01296 Cma-Chr2:7612932 Cma16g01020 Cma-Chr16:7853491 1.72E-13 dispersed
Cma06g01257 Cma-Chr6:8356533 Cma02g01296 Cma-Chr2:7612932 2.53E-24 transposed
Cma02g01296 Cma-Chr2:7612932 Cma20g00138 Cma-Chr20:664760 3.82E-60 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01296 K10754 - csv:101204361 1526.15