Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01297 ATGTCACTGGACATGATGGCATCAGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTTTAGCGGTAAGTGTTCCATGCAACAACATGTTCACACTCGTGACTGTGAGATGTGGCCATTGCACCAATCTGCTGTCCGTAAACATGGGAGCTTCCCTTCAGGTTCTTCCTCCACAAGAGGTCATTCCTCGTCAAATCAAAATATCAGAGGGTCATAAGCAGCCGCAACTAGCGAGCCCCGAGGATTCAAGCAAGGACAGAGGCTCATCTTCTTCAAAATGCAGCAAAATTGGGTCACTTGAATCTGCTGAACGTGACCAACATAGAATCCCTCCAATTCGCCCACCGGAGAAAAGACAGCGGATTCCTTCTGCATATAACAGGTTCATCAAAGCGGAAATCCAAAGGATTAAGGCTAACAACCCTGACATAAGCCACAGAGAAGCCTTTAGCACAGCAGCTAAAAATTGGGCACATTTACCTCACATCCACTTAGGGCAGAAGCTGGATGGAAATAATAAGCAAAGTAATTAA 540 45.37 MSLDMMASERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCTNLLSVNMGASLQVLPPQEVIPRQIKISEGHKQPQLASPEDSSKDRGSSSSKCSKIGSLESAERDQHRIPPIRPPEKRQRIPSAYNRFIKAEIQRIKANNPDISHREAFSTAAKNWAHLPHIHLGQKLDGNNKQSN 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7630829 7634766 + CmaCh02G012970.1 Cma02g01297 289048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01297 179 Pfam YABBY protein 7 168 IPR006780 GO:0007275
Cma02g01297 179 PANTHER AXIAL REGULATOR YABBY 2-RELATED 6 177 - -
Cma02g01297 179 Gene3D High mobility group box domain 114 167 IPR036910 -
Cma02g01297 179 SUPERFAMILY HMG-box 114 163 IPR036910 -
Cma02g01297 179 MobiDBLite consensus disorder prediction 78 100 - -
Cma02g01297 179 PANTHER PROTEIN YABBY 6-RELATED 6 177 IPR006780 GO:0007275
Cma02g01297 179 MobiDBLite consensus disorder prediction 101 118 - -
Cma02g01297 179 MobiDBLite consensus disorder prediction 71 125 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01297 Cma-Chr2:7630829 Cma05g01287 Cma-Chr5:9820965 5.78E-61 dispersed
Cma02g01297 Cma-Chr2:7630829 Cma20g00139 Cma-Chr20:671323 9.61E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34516 PF04690 YABBY 7.30E-71 CL0114 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01297 K25796 - csv:101222154 271.166