Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01304 ATGGCGACGTACTTTCACGGTGGTTCAGAAATCCAAGCGAGTTCTGACGGAATCCACACTCTTTACCTTATGAATCCCAATTATGTACCTTACTCTGACACCCATTCTCAAACGCCACCCAATATGTTATTTCTCAATCCATCCACCCACGCGCTTACTCCTTCCACTCTCCCTCACGCGCCGCCTTCCACTAACCACTTCGTTGGAATTCCCCTCCCTGCAACCGACACTTCTCGTCCAACCTACCACGAGATCTCAGCCCTTCATTCCGTTCCAGCTCAGCGTCTTCACTACAATCTATGGGCTCCTATGGACCAAATCTCCTCCGTGTCGGCCGCCACCGACCCGACCGATTTGAGCTTCCGCCGCCCCGGTACACACCAGGGTTTGTCTTTGAGTCTCTCCTCCCAACAGTCGCTTTACCGGACGATGTCTGCGGATCAGGAGATTCAAGGAGGCAGAGGCGGTGGTGCTCCGGATATCTCGCCGACAAGTGGGGATGAAATTAGGGTGTCCGGTAATTCACCGGCGTCGGCGTCGGTGTCGGTGGTGTCGAGTGGAGTAGCGGGGTCGAAGTACTTGAAAGCGGCGCAAGAACTTTTGGATGAAGTGGTTAACGTTGGCAAAGGAAATAAAACCGACAAAGGGGATAAGATGAAGATGAAGAAAGAATCAACGGCTGCGATTGCTGAACCTTCCGGCGGCGGCGCTGAAAGTACTTCCAAGCCTGTCACTGAGCTCACCACTGCTCAAAGACAGGATCTTCAGATGAAGAAAGCTAAGCTTATTGGCATGCTCGATGAGGTGGAGCAAAAGTACAGACAATACCACCAGCAAATGCAAGCAGTGGCTTGTTCGTTCGAGCAGGCGGCCGGGTTGGACTCGGCCAAGTGCTACGCCTCGCTCGCCTTACAAACCATTTCAAAGCAATTTCGGTGCCTAAAAGATGCAATATGCGCACAAGTTAAAGCCAGTGGCAAGAGCTTGGGGGAAGAGGATTGGTCCGGTGGCAAGATTGAAGGGTCCAGATTGAGATACGTGGACCATCATGTACGGCAGCAAAGAGCTTTGCAACAATTGGGAATGATTCAACATAACACTTGGAGACCTCAGAGAGGTTTGCCTGAACGGGCTGTTTCTGTTCTTCGTGCTTGGCTGTTTGAGCATTTCCTTCACCCATATCGAAAGGATTCGGATAAGATTATTCTCGCGAAACAAACGGGACTCACGAGGAGCCAAGTTTCAAATTGGTTTATAAACGCAAGAGTTCGTCTATGGAAGCCAATGGTTGAAGAAATGTACTCGGAAGAAATCAAAGAGCAAGAACAAAACAGTGACTCCCACGACATGAACAGACACAACAAAAACGAACCCAACAAGCAAAACCACCAGATCATGAACGATTCTCTCAACGATCAAGTTTCCAATTCCTTACAAGCCCATTCAGGCTTCAACCTCGTCCGACCATCATCCGACATGCTCTCATGTCCCAAAAGACAAAGAACAACAAACAACCTCGAAACCCTGTCGACAAAATCTACGCTTTCAAAAGACATAAATGACACAAAACATGTTCATGGAGGTGGGTTTGGTTCATACCCAATTCATGAAATTGGATCAAGGTTCAATTCTGAGCTGTTGACGCCAAGATTTCATGCCAATGGCGTCTCTCTCACGCTTGGCCTTCCACAAACTTACCTCTCCGACCCAAACCTTCAGCTGGGGACAAGGGTTGATATCACCAATGGAGGATCTGACTTCACCGACATCGATCCTGCTCCGGCCACTGCCTACGACGGCGTCGAAATTCAGACCACCAAACGATTTGCTGCCCAATTATTGCCTGATTTTGTCGCCTAA 1860 49.41 MATYFHGGSEIQASSDGIHTLYLMNPNYVPYSDTHSQTPPNMLFLNPSTHALTPSTLPHAPPSTNHFVGIPLPATDTSRPTYHEISALHSVPAQRLHYNLWAPMDQISSVSAATDPTDLSFRRPGTHQGLSLSLSSQQSLYRTMSADQEIQGGRGGGAPDISPTSGDEIRVSGNSPASASVSVVSSGVAGSKYLKAAQELLDEVVNVGKGNKTDKGDKMKMKKESTAAIAEPSGGGAESTSKPVTELTTAQRQDLQMKKAKLIGMLDEVEQKYRQYHQQMQAVACSFEQAAGLDSAKCYASLALQTISKQFRCLKDAICAQVKASGKSLGEEDWSGGKIEGSRLRYVDHHVRQQRALQQLGMIQHNTWRPQRGLPERAVSVLRAWLFEHFLHPYRKDSDKIILAKQTGLTRSQVSNWFINARVRLWKPMVEEMYSEEIKEQEQNSDSHDMNRHNKNEPNKQNHQIMNDSLNDQVSNSLQAHSGFNLVRPSSDMLSCPKRQRTTNNLETLSTKSTLSKDINDTKHVHGGGFGSYPIHEIGSRFNSELLTPRFHANGVSLTLGLPQTYLSDPNLQLGTRVDITNGGSDFTDIDPAPATAYDGVEIQTTKRFAAQLLPDFVA 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7678031 7681824 - CmaCh02G013040.1 Cma02g01304 289055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01304 619 SUPERFAMILY Homeodomain-like 369 435 IPR009057 -
Cma02g01304 619 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 6 466 - -
Cma02g01304 619 SMART prehox3 182 320 IPR006563 -
Cma02g01304 619 ProSiteProfiles 'Homeobox' domain profile. 365 428 IPR001356 GO:0003677
Cma02g01304 619 SMART HOX_1 368 432 IPR001356 GO:0003677
Cma02g01304 619 Gene3D - 371 451 - -
Cma02g01304 619 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 6 466 - -
Cma02g01304 619 MobiDBLite consensus disorder prediction 210 245 - -
Cma02g01304 619 Pfam Homeobox KN domain 385 424 IPR008422 GO:0003677|GO:0006355
Cma02g01304 619 MobiDBLite consensus disorder prediction 210 225 - -
Cma02g01304 619 MobiDBLite consensus disorder prediction 149 177 - -
Cma02g01304 619 CDD homeodomain 368 429 IPR001356 GO:0003677
Cma02g01304 619 Pfam Associated with HOX 188 318 IPR006563 -
Cma02g01304 619 Coils Coil 252 279 - -
Cma02g01304 619 MobiDBLite consensus disorder prediction 437 459 - -
Cma02g01304 619 MobiDBLite consensus disorder prediction 437 464 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01304 Cma-Chr2:7678031 Cma20g00823 Cma-Chr20:3913634 2.46E-92 dispersed
Cma14g00361 Cma-Chr14:1592554 Cma02g01304 Cma-Chr2:7678031 3.59E-157 wgd
Cma02g01304 Cma-Chr2:7678031 Cma20g00147 Cma-Chr20:726212 0 wgd
Cma02g01304 Cma-Chr2:7678031 Cma06g00526 Cma-Chr6:2460707 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34517 PF07526 POX 6.00E-47 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01304 - - cmax:111490715 1197.96