Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01309 ATGTCGGGTTCTCCTGCTCCCAACTCCTCTGGCCACCCGCCGGAGCAGATCATGCTCTCTCTTAAACGTCACCTCCCTTTCTCTTCTATCAAACCACCATTTGCATCTCCTGGGGACTATCACTGCTTTGCCCTCGACTCTCCACTCGCCGATCAACAACTTGACTCTATCGTAGTCAAATCTCCGCAATTGAAGCGGAAGAGTGAGGCAGCAGATTATGAAGCTGAGTCAACTGATAGAGCAGCTGGTCCTAGATTTACTGAAGTAGTTAACAGTTCCCATCAAACACCTGTATCTGTAAAAGGAGGAAAGGGTAACAAATCAAGGCTAACCAAATGCAGTAGATCAGGGCCACAGACTCCCATGTCAAATGTTGGTTCACCTTATGCAAACAATCTTACTCCAGTTGGTCCATGCCGTTATGATAGTTCTCTTGGTCTCTTGACAAAGAAGTTTATTAATCTGATCAAACAAGCGGAAGATGGTATTCTTGATCTAAATAAAGCAGCCGACACGTTGGAGGTACAAAAAAGACGAATATATGATATAACGAATGTCCTTGAAGGAATTGGTCTCATAGAAAAGAAACTTAAGAACAGAATTCAGTGGAAGGGGCTTGACGTCTCAAGACCAGGGGATGTTGATGACAACTATGCTGGTCTACAGGCGGAAGTAGAGAACCTTTCCATGGAGGAGAATGGATTAGATGAACAAATAAGAGAGATGCAGGAAAGATTAAGAGACCTCAGTGAAGAGGAGAACAACCAAAGGCAATAG 777 44.14 MSGSPAPNSSGHPPEQIMLSLKRHLPFSSIKPPFASPGDYHCFALDSPLADQQLDSIVVKSPQLKRKSEAADYEAESTDRAAGPRFTEVVNSSHQTPVSVKGGKGNKSRLTKCSRSGPQTPMSNVGSPYANNLTPVGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGDVDDNYAGLQAEVENLSMEENGLDEQIREMQERLRDLSEEENNQRQ 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7700431 7705946 + CmaCh02G013090.1 Cma02g01309 289060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01309 258 PANTHER TRANSCRIPTION FACTOR E2FB 19 257 - -
Cma02g01309 258 SMART E2F_TDP_2 140 205 IPR003316 GO:0005667|GO:0006355
Cma02g01309 258 Pfam E2F/DP family winged-helix DNA-binding domain 142 205 IPR003316 GO:0005667|GO:0006355
Cma02g01309 258 Gene3D - 135 207 IPR036388 -
Cma02g01309 258 MobiDBLite consensus disorder prediction 109 129 - -
Cma02g01309 258 PANTHER TRANSCRIPTION FACTOR E2F 19 257 IPR015633 GO:0000978|GO:0006357
Cma02g01309 258 Coils Coil 156 176 - -
Cma02g01309 258 Coils Coil 218 258 - -
Cma02g01309 258 Gene3D - 212 258 - -
Cma02g01309 258 SUPERFAMILY Winged helix DNA-binding domain 140 203 IPR036390 -
Cma02g01309 258 MobiDBLite consensus disorder prediction 90 129 - -
Cma02g01309 258 SUPERFAMILY E2F-DP heterodimerization region 217 257 IPR037241 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01309 Cma20g00153 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01309 Cma-Chr2:7700431 Cma05g00301 Cma-Chr5:1301819 3.24E-41 dispersed
Cma02g01309 Cma-Chr2:7700431 Cma20g00153 Cma-Chr20:751925 1.09E-169 wgd
Cma02g01309 Cma-Chr2:7700431 Cma03g01126 Cma-Chr3:7646164 1.16E-72 wgd
Cma02g01309 Cma-Chr2:7700431 Cma07g00828 Cma-Chr7:3838530 6.05E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34518 PF02319 E2F_TDP 4.80E-26 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01309 K06620 - csv:101219318 449.129