Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01335 ATGAGCGTCGATAGCCGAAGGCGAGGCCGTGCAGACAACAGTAGGTCGAAGAAGCAGAGGATAATCCGGTCCGCCGAGGAGGAGATCGAATCAAAGCTTGGGTTTGATCTTTTCTCTGAAGGCGATAAGAGGCTTGGATGGTTGCTCACTTTTGCTTCTTCAGCTTTGGAGGATCAGGACACCGGAAAGATCTACAGCTGTATCGATCTTTATTTTGTGGCACAGGATGGCAGCAGTTTCAAGTCAAAATATAAGTTTCGTCCTTACTTCTATGCAGCGACAAAGGACAAAATGGAAACTGATGTGGAGGCTTATTTGAGACGACGTTATGAAGGTCAAATAGCTGATATTGAGATTTTAGAGAAAGAAGACCTTGATCTTAAGAATCATCTGTCTGGCTTGCGCAAGGCATATTTAAAGCTATCATTTGACACTGTTCAAGAATTGATGAACGTGAAGAGTGAACTGTTGCGAGTTGTTGAAAGCAATTGGGCAAAGTCTGATGCTGCAGAAGCATATGATTCTATTTTATTTGGGAGAAGGGAACAAAAGCCCCAAGATTTTGTAGAATGCATTGTTGATCTTCGAGAGTATGATGTTCCTTACCATGTTCGCTTTGCTATTGATCATGATGTGCGCTGCGGACAATGGTACGATGTTAGTGTATCAAGCATTGGTGTTTCACTTGAGAAGAGAAAAGATCTTCTGCAACGTGCTGAAGTTCACATATGTGCGTTTGATATCGAGACCACAAAGCTACCATTAAAATTTCCAGATGCTGAATATGACATGATAATGATGATTTCCTATATGGTTGATGGACATGGGTACTTGATTATCAACAGAGAGTGTGTTGGAGAAGATATCGAGAATTTGGAGTACACTCCAAAACCAGAATATGAAGGGTTCTTTAAAGTGACCAATGTGAAAAATGAGTTAGAGCTTCTCAAATTTTGGTTTGCCCATATGCGAGAGGTGAAACCTGGTATCTATGTTACCTACAATGGCGATTATTTTGACTGGCCATTCATTGAAAGCAGAGCAGCGTATCATGGATTTAAAATGAGTGATGAAGTAGGATTTCAATGCGACAAGAATCAGGGGGAATGCCGTTCTAAATTTGCTTGTCATTTGGATTGCTTTGCGTGGGTTAAGCGTGATAGTTATCTTCCTCAGGGTAGCCAAGGTTTGAAGGCCGTGACAAAAGCTAAATTGGGTTATGATCCTCTTGAAGTGAATCCCGAGGATATGGTGCGGTTTGCAAAGGAAAAGCCTCAGATGATGGCGTCCTATTCGGTTTCAGATGCTGTTGCTACATACTACTTGTACATGACCTATGTTCATCCTTTCATTTTTTCTCTAGCAACTATTATTCCGATGTCACCAGATGAGGTGTTGCGCAAAGGAAGTGGGACTCTTTGTGAGATGCTTCTAATGGTTCAGGCTTACCAGGCTAATGTTGTGTGTCCTAACAAACATCTATCAGATCCAGAGAAATTCTATAACAACCGGCTTCTTGAAAGTGAGACATACATAGGTGGTCATGTAGAATGCCTGGAGAGTGGTGTATTTAGATCCGACCTTCCTACCAGTTTTAGGCTTGATCCATCTGCCTATGATCAATTGATAAACAATCTGGATCGAGATCTGCAGTATGCCATACAAGTAGAAGGAAAAACAGACTTGGAGTTAGTGTCAAATTATAGTGATGTGAAGAATGCTATCATGGAAAAGCTTATTAGATTGCGGGATGAGCCTGTACGTGAAGAGGGCCCTCTGATATATCACCTTGATGTAGCTGCAATGTATCCCAACATTATTTTAACAAATAGACTTCAGCCGTCGTCAATAGTCACAGATGAGGTTTGCACTGCTTGTGATTTCAATCGTCCTGAGAAAACTTGTCTACGAAAACTTGAATGGGTTTGGCGTGGAGAAGTATTCATGGCTAAAAAAAGTGACTATTATCATCTGAAGAATCAAATTGAGTCTGAGTTCGTTGATAGCGGTAGTGCTCGGTTGTCAAAATCATTTCTTGAACTTCCAAAGTTGGAGCAGCAAGCAAAGCTCAAAGAACGTTTGAAGAAATACTGTCAGAAGGCTTATAAACGAGTACTTGATAAGCCAGTCAATGAAGTTCGAGAAGCAGGGATCTGCATGAAAGAAAACTCTTTCTATATTGACACTGTTCGTAGTTTTCGAGATAGAAGGTACGAATACAAAGGGCTCAATAAAGTATGGAAGGGAAAATTATCAGAAGCTAAAGCGAGTGGAAATTCAATCAAGATCCAGGAAGCACAAGACATGGTAGTTCTTTATGATTCTCTACAACTCGCTCATAAATGTATCCTCAACTCCTTTTATGGATATGTGATGCGAAAGGGTGCTCGATGGTATTCAATGGAAATGGCTGGAGTAGTTACATATACTGGAGCAAAAATCATTCAGAATGCTCGTCTGTTAATTGAAAAAATTGGAAAACCATTGGAGTTAGACACCGATGGTATCTGGTGTGCGCTACCTGGATCATTCCCAGAAAACTTTACCTTCAAAACAAAAGATCTGAAGAAGTTGACAATTTCATATCCATGTGTAATGCTTAATGTTGATGTGGCAAGGAACAACACAAATGACCAGTATCAGACGCTTATAGATCCTGTGAAGAAAATATATAAAACACATAGTGAATGCTCAATTGAATTTGAAGTAGATGGACCATACAAGGCAATGATCCTTCCTGCTTCCAAAGAAGAAGGCATTTTGATCAAGAAAAGATATGCTGTCTTCAATGATGATGGAACACTTGCAGAGCTAAAAGGCTTTGAGATTAAGCGTAGGGGGGAGTTAAAGCTCATCAAAGTTTTCCAGGCTGAACTTTTTGACAAGTTTCTTCACGGTTCCACCTTAGAAGAATGCTATTCAGTTGTTGCATCTGTTGCAAATCGCTGGTTAGATCTTCTAGATAATCAAGGAAAAGATATTGCAGATAGCGAGTTGCTTGATTATATATCTGAATCCAGTACCATGAGCAAATCTTTGGCAGACTATGGAGAACAGAAGTCTTGTGCTGTTACCACTGCAAGACGTCTTGCAGATTTTCTTGGTGATACAATGGTCAGAGATAAAGGCCTACGTTGTCAATATATAGTTGCATGTGAACCTAAGGGAACACCTGTAAGTGAGCGTGCTGTTCCAGTTGCAATCTTTGAGACTGATGCAGAGATTATGAAATTTTATGTACGCAAATGGTGCAAGATTTCATCTGAAGTTGGCATCCGATCCATCATTGACTGGTCCTACTACAAGCAACGTCTAAGCTCAGCCATTCAAAAAATTATAACAATTCCAGCAGCCATGCAAAAGGTTGCAAATCCTGTTCCTAGGGTTGTCCATCCTGATTGGTTACATAAGAAAGTTCGTGAGAAGGACGATAAATTTCGCCAACAGAAAGTAGCTGATATGTTTGCATCCTCAAACAGAGGTAAGCATTCAAAGAAGAATAGTGATGTCAGCTGCAGCAAGCATGTGGTGAATGAAGATAATTCTGACGATTTAGAAGATTTTCAAAAGAAAACAAGTTCTACAAATGGCCCCAAACCAGTTGCCCGATGTTATGATGTCAGAGGAATGAAACATTCAAGTACAAGCTATAGCGAAATAAACTCCAAGGTGCAGGATAATTTTAATGAAGGATGTGAGCCTTCTTCACCTTTGCATGTTGAAAACATTGACAAAAATGTCGATTACAATGGATGGCTTGAAATGAAGAAGCGAAAGTGGAAGGATACTTTGGACAAGAGGAAGAAGCAAAAGCTGGTAAGTTTAAGGACTCCAGGTGCTGCTAATGATGTAACACGGGAGTTAAAGGGTGCTATGAATGATAAAGAGGCTCCTAGAACAGGTGTTGGTTCATATTTTAAGAGGCATGAAGGATCTATAACACGCTTCCATTGGCAGATTTTACAGCTTGTTCAGAGTTCACAGAGTGGCCAATATTTTGTTTGGGCTGTGGTTGAAGGAGTTATGCTAAAGATTCCTATTACTGTTCCTAGAGTTTTTTACCTTAATTCCAAAGTACCTATTACAGATGAATTTGTGGGTAGGCGTGTTAACAAAACGCTTCCCCATGGAAGGCACAGTTACAACCTTTATGAGGTTGTGACTGATGAAGGTCAATTTAGAACACAGAGGAACAAACTTGCAGCCCTCCTTGCAGACCCAGAAGTAGAGGGAATCTATGAAAGCAAGGTACCATTGGAGTTCAAGTCCATCCTTCAGATTGGTTGCGTCTGTAAAGTTGATAGAACTGCTAAAAAACGAAATATTCAAGATGGATGGAGTCTGGAAGAACTGCAAATGAAGACTACAACAGAATGCAGTTATCTGGAAAAGTCAATCTCTTTCTTCTTTGTGTATCATAGCATTTCTGAAGGAAGAGCTATCTACATTACTTTTTTTCCCTCCACGAGATCGATAGTTGTGGTGATAGTTAGTCCTTACCAAAACAAAGACTTGTCATCAACTTTTCTTGAAAGGCAATTTCGCGAAACTTGTCAAATACTGTCCGGTAAATCACAACCATTTGAGAGTGGTATAACTTGTAAGGTTGACTATGTTGTTAACATCAAAGAAGCTGAAGTGATTTTGCAAAGATCGATAACAGAACACAGGAGCTTAAACCATGGACCTATTGTAGCTGTAATTCAATGCCCAAATGTGCAACTGCTGAAGTCAGATGTTCGAGCATTAGATGATTTTCCATGTGTGAGCATTCCTTTTAATGCTCGGGATAGCCAATATCAGGTTCTTGGTTGGCAACAAACAGCTGCAAAGATTGGAATGCAACGTTGTGCTGCATCATCCCAATGGTTGAATGAGAGAATCTCTCTTGCAAGATATGCCCATGTACCATTAGGAAATTTTGAACTTGATTGGCTAATTTTTACAGCAGATATATTTTTTTCAAGAGCACTACACGATCAACAGCAGGTACTTTGGATATCGGATGATGGTGTTCCAGATATAGGAGGCATTAACATGGAAGACGTGTGTTTTGTGGATGAGGTCCAACAACCTGTTCTGACGTACCCTGGAGCATATAGAAAAGTTTCCGTGGAGCTGAAGATCCACCATTTGGCGGTCAATGCCCTGCTGAAGAGCAGCCAAGTGAATGAAATGGAAGGAGGTAGTTTGTTTGGCTTTGAACATGATATGCAATATGGAGCCCAACTTTCTAATGAAGACGGTGGCTTTGACGAGGCTTCATCATCTGCGCCGACATTTCGTGTCCTGAAACAATTGATACAAAGGTGTCTTGCAGATGCTGTTACATCTGGAAATGTATATGCTGATGCAATTTTGCGGCATCTGTACCGATGGATTTGCAGCCCCCAATCAAGACTTCATGACCCTGCTCTTCATCGCTTACTCCACAAGGTTATGCAAAAGGTGTTTGCTCTTTTGTTGGCTGAGCTACGAAAATTAGGTGCCACCATTATATTTGCAAACTTCTCAAAAATTATTATAGACACGGGAAGGTTTGATCTCCAGGCTGCTAAAGCATATTGTGATAGCTTGCTGAAAACAGTGCAAACAAGGGATCTGTTTGAGTGGATTGAATTGGAACCGTTACAGTTCTGGCACTCCCTGTTGTTTATGGATCAGTTTAACTACGGTGGAATCCCAGCAAAAGATGATGAGAGCACAGATATTGAATCTCAAGTTGATATAGTGGCCAACTGGAACATTGCTGAATATCTACCCAAGAAGATTCAGGATCACTTCGTTTTTATCATCTCTCAATTTTTGTATATTCCATGGAATTATGCAACCAAACAAGCTGAAGCAAGAGCATCATTGCCGCTTGGTGACACATGTACCCCATCTATTACAGTTGCAGCTGCTGAATCGTTTGAATATCGTGTTACAGAACATCTCAAAGAGCAGCTAAGCTCTTACTTCAGCGACAAACTGTTGGGAATTGTTCGTGATATTGTTCTTCATATGAAAGGGATGGACAAAAACACCCAGGATATTTTACCAGATCAACCTTCGGGTAGCATACATAAAGGAGATGCTGCATTGGAATTCATTAAGCTCGTATGCGCTGTTTTGGCTCTTGATCAAAATGTCCTGCATGATGTTCTGGTAATGAGGAAGAATTTACTGAAGTATGTTCGTGTAAGAGAGTTCGCACCAGAAGCAGAGTTTTCTGATCCATGCTCGTCCATAATCTTACCGAACGTTATTTGCAGCTATTGTGATGATTGTCGAGATTTGGACTTGTGCCGTGACTCGGCTTTACTAGCACAAGAATGGCGCTGTGCAGTGCCACAATGCGAACAACCATACAACCGAGAAGTGATGGAGAACGCTCTGCTTCAAATCGTGAGGCAGAGGGAGCGCCTCTATCACCTACAGGATCTGGTATGCGTTCGCTGCAAGCAAGTCAAAGCAGCTCATTTGTCAGAACAGTGTGCTTGTGCTGGCTCATTTCAATGCAAAGATGTGGAAGATTTTTTCAGCAAGATGAGGATTCTCCTCAACGTAGCCACTCGTCAAAAGTTCCAATTGTTGCAAGAGTTCACCTCCTGGATCTTAGAAGTCTCATAA 6612 40.85 MSVDSRRRGRADNSRSKKQRIIRSAEEEIESKLGFDLFSEGDKRLGWLLTFASSALEDQDTGKIYSCIDLYFVAQDGSSFKSKYKFRPYFYAATKDKMETDVEAYLRRRYEGQIADIEILEKEDLDLKNHLSGLRKAYLKLSFDTVQELMNVKSELLRVVESNWAKSDAAEAYDSILFGRREQKPQDFVECIVDLREYDVPYHVRFAIDHDVRCGQWYDVSVSSIGVSLEKRKDLLQRAEVHICAFDIETTKLPLKFPDAEYDMIMMISYMVDGHGYLIINRECVGEDIENLEYTPKPEYEGFFKVTNVKNELELLKFWFAHMREVKPGIYVTYNGDYFDWPFIESRAAYHGFKMSDEVGFQCDKNQGECRSKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYQANVVCPNKHLSDPEKFYNNRLLESETYIGGHVECLESGVFRSDLPTSFRLDPSAYDQLINNLDRDLQYAIQVEGKTDLELVSNYSDVKNAIMEKLIRLRDEPVREEGPLIYHLDVAAMYPNIILTNRLQPSSIVTDEVCTACDFNRPEKTCLRKLEWVWRGEVFMAKKSDYYHLKNQIESEFVDSGSARLSKSFLELPKLEQQAKLKERLKKYCQKAYKRVLDKPVNEVREAGICMKENSFYIDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKIGKPLELDTDGIWCALPGSFPENFTFKTKDLKKLTISYPCVMLNVDVARNNTNDQYQTLIDPVKKIYKTHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLEECYSVVASVANRWLDLLDNQGKDIADSELLDYISESSTMSKSLADYGEQKSCAVTTARRLADFLGDTMVRDKGLRCQYIVACEPKGTPVSERAVPVAIFETDAEIMKFYVRKWCKISSEVGIRSIIDWSYYKQRLSSAIQKIITIPAAMQKVANPVPRVVHPDWLHKKVREKDDKFRQQKVADMFASSNRGKHSKKNSDVSCSKHVVNEDNSDDLEDFQKKTSSTNGPKPVARCYDVRGMKHSSTSYSEINSKVQDNFNEGCEPSSPLHVENIDKNVDYNGWLEMKKRKWKDTLDKRKKQKLVSLRTPGAANDVTRELKGAMNDKEAPRTGVGSYFKRHEGSITRFHWQILQLVQSSQSGQYFVWAVVEGVMLKIPITVPRVFYLNSKVPITDEFVGRRVNKTLPHGRHSYNLYEVVTDEGQFRTQRNKLAALLADPEVEGIYESKVPLEFKSILQIGCVCKVDRTAKKRNIQDGWSLEELQMKTTTECSYLEKSISFFFVYHSISEGRAIYITFFPSTRSIVVVIVSPYQNKDLSSTFLERQFRETCQILSGKSQPFESGITCKVDYVVNIKEAEVILQRSITEHRSLNHGPIVAVIQCPNVQLLKSDVRALDDFPCVSIPFNARDSQYQVLGWQQTAAKIGMQRCAASSQWLNERISLARYAHVPLGNFELDWLIFTADIFFSRALHDQQQVLWISDDGVPDIGGINMEDVCFVDEVQQPVLTYPGAYRKVSVELKIHHLAVNALLKSSQVNEMEGGSLFGFEHDMQYGAQLSNEDGGFDEASSSAPTFRVLKQLIQRCLADAVTSGNVYADAILRHLYRWICSPQSRLHDPALHRLLHKVMQKVFALLLAELRKLGATIIFANFSKIIIDTGRFDLQAAKAYCDSLLKTVQTRDLFEWIELEPLQFWHSLLFMDQFNYGGIPAKDDESTDIESQVDIVANWNIAEYLPKKIQDHFVFIISQFLYIPWNYATKQAEARASLPLGDTCTPSITVAAAESFEYRVTEHLKEQLSSYFSDKLLGIVRDIVLHMKGMDKNTQDILPDQPSGSIHKGDAALEFIKLVCAVLALDQNVLHDVLVMRKNLLKYVRVREFAPEAEFSDPCSSIILPNVICSYCDDCRDLDLCRDSALLAQEWRCAVPQCEQPYNREVMENALLQIVRQRERLYHLQDLVCVRCKQVKAAHLSEQCACAGSFQCKDVEDFFSKMRILLNVATRQKFQLLQEFTSWILEVS 2203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7807352 7832150 - CmaCh02G013350.1 Cma02g01335 289086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01335 2203 CDD DNA_polB_epsilon_exo 240 444 - -
Cma02g01335 2203 CDD POLBc_epsilon 503 1121 - -
Cma02g01335 2203 SUPERFAMILY DNA/RNA polymerases 486 1114 IPR043502 -
Cma02g01335 2203 MobiDBLite consensus disorder prediction 1 20 - -
Cma02g01335 2203 SMART polmehr3 239 842 IPR006172 GO:0000166|GO:0003676|GO:0003887
Cma02g01335 2203 Pfam DNA polymerase family B 597 1069 IPR006134 GO:0000166|GO:0003677
Cma02g01335 2203 Gene3D - 238 468 IPR036397 GO:0003676
Cma02g01335 2203 Gene3D - 940 1124 IPR042087 -
Cma02g01335 2203 Gene3D DNA Polymerase, chain B, domain 1 56 234 - -
Cma02g01335 2203 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 30 2200 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Cma02g01335 2203 Pfam DNA polymerase family B, exonuclease domain 74 400 IPR006133 -
Cma02g01335 2203 SUPERFAMILY Ribonuclease H-like 66 467 IPR012337 -
Cma02g01335 2203 MobiDBLite consensus disorder prediction 1154 1203 - -
Cma02g01335 2203 Pfam Domain of unknown function (DUF1744) 1525 1894 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Cma02g01335 2203 MobiDBLite consensus disorder prediction 1159 1190 - -
Cma02g01335 2203 Gene3D Palm domain of DNA polymerase 752 936 IPR023211 -
Cma02g01335 2203 SMART DUF1744_2 1509 1894 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01335 K02324 - csv:101208568 4062.3