Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cma02g01373	ATGGGTCAGATTCAGTACTCTGAGAAGTACTTCGATGATACTTACGAGTATAGGCATGTGGTGCTCCCACCCGATGTGGCAAAGTTGCTTCCGAAGAATCGCCTTCTCTCGGAAAATGAGTGGCGTGCAATTGGAGTTCAGCAGAGTCGTGGGTGGGTGCACTATGCTATTCATCGACCTGAGCCGCATATCATGCTATTCCGGAGGCCCCTGAACTACCAACAGCAGCAGGAGAACCTCGCTCAACAGAACGTGCTTGCTGCTAAATGA	270	50.74	MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQQNVLAAK	89

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
2	8007504	8008596	+	CmaCh02G013730.1	Cma02g01373	289124

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cma02g01373	89	ProSitePatterns	Cyclin-dependent kinases regulatory subunits signature 1.	6	24	IPR000789	GO:0016538
	Cma02g01373	89	PRINTS	Cyclin-dependent kinase regulatory subunit signature	3	17	IPR000789	GO:0016538
	Cma02g01373	89	PRINTS	Cyclin-dependent kinase regulatory subunit signature	18	32	IPR000789	GO:0016538
	Cma02g01373	89	PRINTS	Cyclin-dependent kinase regulatory subunit signature	40	54	IPR000789	GO:0016538
	Cma02g01373	89	PRINTS	Cyclin-dependent kinase regulatory subunit signature	55	69	IPR000789	GO:0016538
	Cma02g01373	89	Pfam	Cyclin-dependent kinase regulatory subunit	4	70	IPR000789	GO:0016538
	Cma02g01373	89	PANTHER	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT	1	86	-	-
	Cma02g01373	89	SUPERFAMILY	Cell cycle regulatory proteins	1	83	IPR036858	GO:0016538
	Cma02g01373	89	Gene3D	-	1	83	IPR036858	GO:0016538
	Cma02g01373	89	PANTHER	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7	1	86	-	-
	Cma02g01373	89	SMART	CKS_2	3	72	IPR000789	GO:0016538

Event-related genes

Select	Gene_1	Gene_2	Event_name
	Cma02g01373	Cma13g00263	CCT

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Cma02g01373	Cma-Chr2:8007504	Cma20g00533	Cma-Chr20:2550542	8.79E-49	dispersed
	Cma13g00263	Cma-Chr13:2168852	Cma02g01373	Cma-Chr2:8007504	3.37E-51	wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cma02g01373	K02219		-	egr:104421234	172.555