Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01373 ATGGGTCAGATTCAGTACTCTGAGAAGTACTTCGATGATACTTACGAGTATAGGCATGTGGTGCTCCCACCCGATGTGGCAAAGTTGCTTCCGAAGAATCGCCTTCTCTCGGAAAATGAGTGGCGTGCAATTGGAGTTCAGCAGAGTCGTGGGTGGGTGCACTATGCTATTCATCGACCTGAGCCGCATATCATGCTATTCCGGAGGCCCCTGAACTACCAACAGCAGCAGGAGAACCTCGCTCAACAGAACGTGCTTGCTGCTAAATGA 270 50.74 MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQQNVLAAK 89
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 8007504 8008596 + CmaCh02G013730.1 Cma02g01373 289124
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01373 89 ProSitePatterns Cyclin-dependent kinases regulatory subunits signature 1. 6 24 IPR000789 GO:0016538
Cma02g01373 89 PRINTS Cyclin-dependent kinase regulatory subunit signature 3 17 IPR000789 GO:0016538
Cma02g01373 89 PRINTS Cyclin-dependent kinase regulatory subunit signature 18 32 IPR000789 GO:0016538
Cma02g01373 89 PRINTS Cyclin-dependent kinase regulatory subunit signature 40 54 IPR000789 GO:0016538
Cma02g01373 89 PRINTS Cyclin-dependent kinase regulatory subunit signature 55 69 IPR000789 GO:0016538
Cma02g01373 89 Pfam Cyclin-dependent kinase regulatory subunit 4 70 IPR000789 GO:0016538
Cma02g01373 89 PANTHER CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT 1 86 - -
Cma02g01373 89 SUPERFAMILY Cell cycle regulatory proteins 1 83 IPR036858 GO:0016538
Cma02g01373 89 Gene3D - 1 83 IPR036858 GO:0016538
Cma02g01373 89 PANTHER CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 1 86 - -
Cma02g01373 89 SMART CKS_2 3 72 IPR000789 GO:0016538
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cma02g01373 Cma13g00263 CCT
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01373 Cma-Chr2:8007504 Cma20g00533 Cma-Chr20:2550542 8.79E-49 dispersed
Cma13g00263 Cma-Chr13:2168852 Cma02g01373 Cma-Chr2:8007504 3.37E-51 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01373 K02219 - egr:104421234 172.555