Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01396 ATGGAAGAAATGAGTGAGGAAATGACGCTATTGGATGTGACAGAGGATGCGCATGTCCAAAATAAGGTTAGGCAAGATGCTCAAGAGAATGAGTATTTACTGAAACCTGAAAATATCAACATGGTTGTATCACAAGAAATGCTTATGCCCATTGACGGTGGCTATTCACAGGATTATCCTCATGAATTTACTGACATTTTAGAGGGTAAGAATCTGAATAGGTGTAAGAACAATGTGAAATTATCTGATCAACCAGAGTGCAGTCCTCACTGTATGGATGATGCTGGCGTAATGGTTGAAGAACTAACTGTGAAAAATCAAAGTAGTTCCAATTTAGCAATTATTGGTCCATCAAACAATAGAGCACGACTGCTTTCTGGGCATAGTCCGTGGCAGCATCTTTACCAGCTGGCAAGTGGTTCAGGAAGTGGGAGTTCACTTGTCGATACTTCTTACAAGAATATTGGTCAGGCAGTAATCACTGGCTTGGAGAATGGTGGGTACTCATCTTTTCCGGAGTCTTTTGTTGGAGGAGCCAATCGTAATGATTGTGGAGAGGAATTGGAAGAATTGAAGGCTATTGACAATAAGGGTGTTGATGCTCTTGGCAGCATTCGGACCAAGATTCTATCAAAATCGGGGTTTCCTGAATATTTTGTTAAAAATACCTTGAAAGGCAAGGGGATCATTCGAAGAGGTGTTCCTCTGGAGGGCTTTAGTGTTGAACATAGAAACCTTAAGAATGCAAGGAATGCTGGGGGCATTACATTGGCATCTGACTCATCATTACGGCATGATGCTAAAGCAGTCATGCCCTCTACGTATAAGAAATCTGAGCGTAAACGTCAGAGTTCTGCTTTAGATGGTATTAATCTAAGAGAATGGCTTAAAGTTCCCCACGAAAAAGTAAATAAAACTAAATGCTTGTATATATTTAGGCGCATAGTTGAACTGGTGGATCGTGCTCATGCTCGGGGGGTTTTCTTGCATGACTTACGACCATCTACTTTCAGGATATTGACAACAAATCAGGTGAGGTACTTTGGATCTTTTATTCAAGGGAAAATGCCTGAAAGTCTAATGGTTATAGATAGTCAATGTTCAGATAGCCGTCCGACTCGGAAAAGGCCATTAGAACAAGGGAACTTTCTGTCATTTGGTGTATCTCCAAAAAAGCAAAAAGATATCCAAAATACAAGTCTTATGGCCCGGCACTCTCATTTTCCTTTAAAATCTTGTGTCAATCTTGAAACTGCAAATACAAGGGACTGCAATATGAATGATTTGGAAAATTATGATGAACATTTTGCGGAACGGGGGGTTTGGAGCATGCCTGCTGGCCATTGTGCATATGATTCAGCCCAGACTCCAATAAGTGACCAATTGGAAGAGAATTGGTATGCAAGTCCAGAGGAACTAAATGCAGGATGCTTCTCAGCTAAATCAAATATATTCTCACTTGGTGTTCTTCTTTTTGAGTTACTTGGAAAGTTTGAATCTGATGGCACACTTGCTGCTGCAATGTCAAATTTGCGTGATAGGATTCTTCCTCCTAACTTTCTAGCAGATAATTTGAAGGAAGTTGGGTTTTGTCTTTGGCTACTTCATCCTGAACCTGCCTCTCGTCCGACAACAAGGGAAATTTTACAATCAGAACTAATTAATGGAATGACAAATTCTCCGCCATTAGAGCTTTCAACATCTATTGATGAGGAAGATGCTGAATCAGAGTTGTTATTGCAGTTTCTCACATCGCTGAATGAACAAAAGCAAAAACAAGCCGCAAAGTTGGCGGAGGACATTCGGCATTTAGAATCAGATATTGAAGAAGTCAACAAAAGGCACAGGTCCACGGAACCCTTGGTTAAATCTGGCTTGTCTAGTACGGTGGATGGAAGGGATGATTTCGTGTTTCATGGAGGATATCAGAATTCAGATGTGCACTCTGTGGTATCCAAAATATTACATATCAATGAAGAGAGAATAGAAAAAAATATAATCCAGCTTGAAAGTGCTTATTTTTCCATGAGATCAAAAGTAGATTCTTCTGAGAATGATTCAGCAGTTCGGACAGATATAGATTTATTTAGAACCCGTGAAAACTGTTATCTACCACAAAAAGATGATGAAAGAACTCATGGTGATCGTCTTCGTGCCTTCTTTGACGGGTTTTGCAAGTATTCTCGCTATAGCAAGTTTCAAGTACGTGGGGTACTGAGAAGTGGTGATTTTAACAGTTCCTCAAATGTAATCTGCTCCTTGAGTTTTGATCGGGACGAGGACTATTTTGCTGCTGCTGGAGTGTCAAAGAAAATAAGGATTTTTGACTTTAATTCAGTCTTTAGCGACTCAGTAGATATTCACTATCCTGCAGTTGAAATGTTTAATAGATCAAAGCTTAGCTGTGTTTGCTGGAATAGCTACATCAGGAACTATCTGGCTTCTACTGATTATGATGGTGTTGTTAAGCTATGGGATGCAACTGTTGGTCAAGAGGTTTTTCAATTCAAAGAACATGAGAAGAGGGCGTGGTCTGTTGACTTTTCAAAAGTGCATCCTACAAAGTTGGCCAGTGGAAGTGATGATTGTGCTAAGAACTCTTTGGGCACAATCAGGAACATTGCAAATGTCTGCTGCGTTCAGTTTTCTGCTCACTCAACTCATATGCTTGCTTTTGGGTCTGCCGATTACAGAACCTATTGCTTCGATCTACGAAATACTAAAGCCCCCTGGTGTGTATTGGGCGGCCATGAGAAAGCTGTAAGCTATGTGAAATTCTTGGACTCGGAGACCCTTGTATCTGCATCCACTGACAACACGTTGAAGCTATGGGACCTTAATAGAACCAATCCTACTGGCTTGTCTACCAATGCTTGCAGTTTAACTCTCAATGGTCACACTAATGAAAAGAATTTCGTGGGTTTATCTGTTTCCGATAGCTACATTGCTTGTGGTTCAGAAACAAATGAAGTATATGCTTACCATAGATCTCTGCCCATGCCAATAACTTCCTATAAGTTTGGTTCTATTGACCCCGTTTCTGGAAAAGAGACCGAGGACGACAATGGACAGTTTGTTTCGAGTGTATGCTGGAGAGGAAAATCCGACATGGTTGTTGCAGCCAATTCAATCGCTTTACAGCTCGTGAATTTGACAGAATATCTGAAGCCCGATTCTGAGAATAGATGTAATGATCATTCTCTGTTTCAAGAACCGGGGAGCATCGGCTGTCTGCACAATGTTAAACCTGGCGGCTGA 3258 40.82 MEEMSEEMTLLDVTEDAHVQNKVRQDAQENEYLLKPENINMVVSQEMLMPIDGGYSQDYPHEFTDILEGKNLNRCKNNVKLSDQPECSPHCMDDAGVMVEELTVKNQSSSNLAIIGPSNNRARLLSGHSPWQHLYQLASGSGSGSSLVDTSYKNIGQAVITGLENGGYSSFPESFVGGANRNDCGEELEELKAIDNKGVDALGSIRTKILSKSGFPEYFVKNTLKGKGIIRRGVPLEGFSVEHRNLKNARNAGGITLASDSSLRHDAKAVMPSTYKKSERKRQSSALDGINLREWLKVPHEKVNKTKCLYIFRRIVELVDRAHARGVFLHDLRPSTFRILTTNQVRYFGSFIQGKMPESLMVIDSQCSDSRPTRKRPLEQGNFLSFGVSPKKQKDIQNTSLMARHSHFPLKSCVNLETANTRDCNMNDLENYDEHFAERGVWSMPAGHCAYDSAQTPISDQLEENWYASPEELNAGCFSAKSNIFSLGVLLFELLGKFESDGTLAAAMSNLRDRILPPNFLADNLKEVGFCLWLLHPEPASRPTTREILQSELINGMTNSPPLELSTSIDEEDAESELLLQFLTSLNEQKQKQAAKLAEDIRHLESDIEEVNKRHRSTEPLVKSGLSSTVDGRDDFVFHGGYQNSDVHSVVSKILHINEERIEKNIIQLESAYFSMRSKVDSSENDSAVRTDIDLFRTRENCYLPQKDDERTHGDRLRAFFDGFCKYSRYSKFQVRGVLRSGDFNSSSNVICSLSFDRDEDYFAAAGVSKKIRIFDFNSVFSDSVDIHYPAVEMFNRSKLSCVCWNSYIRNYLASTDYDGVVKLWDATVGQEVFQFKEHEKRAWSVDFSKVHPTKLASGSDDCAKNSLGTIRNIANVCCVQFSAHSTHMLAFGSADYRTYCFDLRNTKAPWCVLGGHEKAVSYVKFLDSETLVSASTDNTLKLWDLNRTNPTGLSTNACSLTLNGHTNEKNFVGLSVSDSYIACGSETNEVYAYHRSLPMPITSYKFGSIDPVSGKETEDDNGQFVSSVCWRGKSDMVVAANSIALQLVNLTEYLKPDSENRCNDHSLFQEPGSIGCLHNVKPGG 1085
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8104971 8112853 + CmaCh02G013960.1 Cma02g01396 289147

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01396 1085 Pfam WD domain, G-beta repeat 913 945 IPR001680 GO:0005515
Cma02g01396 1085 Pfam WD domain, G-beta repeat 747 776 IPR001680 GO:0005515
Cma02g01396 1085 ProSiteProfiles Protein kinase domain profile. 191 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g01396 1085 PANTHER PROTEIN SPA1-RELATED 2 3 1044 - -
Cma02g01396 1085 Gene3D Transferase(Phosphotransferase) domain 1 289 561 - -
Cma02g01396 1085 SMART WD40_4 956 995 IPR001680 GO:0005515
Cma02g01396 1085 SMART WD40_4 732 776 IPR001680 GO:0005515
Cma02g01396 1085 SMART WD40_4 907 945 IPR001680 GO:0005515
Cma02g01396 1085 SMART WD40_4 864 903 IPR001680 GO:0005515
Cma02g01396 1085 SMART WD40_4 788 826 IPR001680 GO:0005515
Cma02g01396 1085 SMART WD40_4 829 863 IPR001680 GO:0005515
Cma02g01396 1085 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 914 947 - -
Cma02g01396 1085 SUPERFAMILY WD40 repeat-like 744 1041 IPR036322 GO:0005515
Cma02g01396 1085 ProSiteProfiles Trp-Asp (WD) repeats profile. 914 954 IPR001680 GO:0005515
Cma02g01396 1085 PANTHER PROTEIN SPA1-RELATED 2 3 1044 IPR044630 GO:0009640
Cma02g01396 1085 Gene3D - 720 1049 IPR015943 GO:0005515
Cma02g01396 1085 SUPERFAMILY Protein kinase-like (PK-like) 289 559 IPR011009 -
Cma02g01396 1085 Coils Coil 580 614 - -
Cma02g01396 1085 ProSitePatterns Trp-Asp (WD) repeats signature. 932 946 IPR019775 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01396 K16240 SPA1; protein suppressor of PHYA-105 1 - csv:101211350 1772.29
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g01396 Cma15g01269 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01396 Cma-Chr2:8104971 Cma09g00865 Cma-Chr9:4237452 7.98E-174 dispersed
Cma15g01269 Cma-Chr15:8055396 Cma02g01396 Cma-Chr2:8104971 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g105 . . . . . . . Bma14g00626 . . Cma02g01396 Cma15g01269 Car02g01175 Car15g01144 . . Cpe05g00378 . . . . . . . . . . . . . . Cone8ag0255 Cone12ag0261 . . . Csa05g00216 Chy09g01283 . . . Bda07g00466 . . Bpe11g00642 . . . Cmo02g01431 Cmo15g01339 . . . . . Cpe13g00119 Bhi12g00161 . . Lac11g2015 Hepe06g1490 . Lcy12g1581 Cla01g00199 Cam01g0205 Cec01g0199 Cco01g0204 Clacu01g0201 Cmu01g0197 Cre09g2310 Lsi09g00187 . . Cme09g01828
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005844 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 2 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g01396 Cma_Chr02 FPKM 5.521227 4.767135 14.860862 15.004323 11.585952 10.389039 13.183881 9.863416 7.864505 9.297039