Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01403 ATGAATATGGATTTCGACTCTGTTTTTGACCTCCCTGTTAAGTTCACCGAGCATCGTAACCATGTTAAGCACTCTTCAATGCCGGAAATTACGCCGAGAGTTGTACGAATTTCCTTCACTGACGGTGACGCCACCGATTCCTCCAGTGATGATGAGAACGAAATGTTTGGTCGCCGCAGAGTGAAGAAGTTTGTGAATGAGATTACGATTGAGCCGTCTTGTTCTGGAGAAGGAAATGGAATCTGGGGTGTGAACAGATCGGCGAGAAATGGCCGGAGACGGTCGTCCGGGAAATGTGGGGTCTCGTCCAGGAGTCGTCGGTCGGTGAAGATGCCGGACGGGAAGAAGTTCCGCGGTGTGAGACAAAGACCGTGGGGAAAATGGGCTGCCGAAATCAGAGACCCACTGCGGCGCGTACGGGTGTGGCTGGGAACTTATGACACGGCAGAGGAAGCTGCCATGGTTTACGACAACGCCGCCATTCAACTCCGGGGTCCCGATGCACTGACCAATTTCACCACCCAATCGCCCAAAAAATGCTCCGCCTACGACTCCGGCGAAGAGTCGAACAACAACATTTGCTCTCCGACCTCAGTCCTCCGGTGTCCATCGCCTTCAAACGAAGAGGACCAATCTCAACTCCCCGGCGAGCCAGACAACTCGTCCGTATCGGAAAATTTCTCGTCGGAGTTCTCAGACTTCTCGAGCTACTCCGACACCTTCATTCCAGACGACATTTTCGCCTTCGAAACTTCGATTCCGACCTTGTTAGACGACGAGATTGGCCTACATCACCAAACTAATTTCTTCGGCGATGACAGTTTCTTCAACGGCGTGTTTCATAGTCCCATCGAAAAAACCGGGTTCGGGTTCGGGTTCGAGTACCCTACTCCCCCTACGGACGACTTCTTCCAAGACTTCAGCGACGTGTTCGGTTCGGATCCTCTCGTTGCCCTTTAA 960 52.5 MNMDFDSVFDLPVKFTEHRNHVKHSSMPEITPRVVRISFTDGDATDSSSDDENEMFGRRRVKKFVNEITIEPSCSGEGNGIWGVNRSARNGRRRSSGKCGVSSRSRRSVKMPDGKKFRGVRQRPWGKWAAEIRDPLRRVRVWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFTTQSPKKCSAYDSGEESNNNICSPTSVLRCPSPSNEEDQSQLPGEPDNSSVSENFSSEFSDFSSYSDTFIPDDIFAFETSIPTLLDDEIGLHHQTNFFGDDSFFNGVFHSPIEKTGFGFGFEYPTPPTDDFFQDFSDVFGSDPLVAL 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8122187 8123146 - CmaCh02G014030.1 Cma02g01403 289154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01403 319 Gene3D AP2/ERF domain 115 175 IPR036955 GO:0003700|GO:0006355
Cma02g01403 319 SMART rav1_2 116 179 IPR001471 GO:0003700|GO:0006355
Cma02g01403 319 MobiDBLite consensus disorder prediction 182 227 - -
Cma02g01403 319 PRINTS Ethylene responsive element binding protein signature 117 128 IPR001471 GO:0003700|GO:0006355
Cma02g01403 319 PRINTS Ethylene responsive element binding protein signature 139 155 IPR001471 GO:0003700|GO:0006355
Cma02g01403 319 Pfam AP2 domain 116 165 IPR001471 GO:0003700|GO:0006355
Cma02g01403 319 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF2 12 315 - -
Cma02g01403 319 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 12 315 - -
Cma02g01403 319 ProSiteProfiles AP2/ERF domain profile. 116 173 IPR001471 GO:0003700|GO:0006355
Cma02g01403 319 MobiDBLite consensus disorder prediction 85 118 - -
Cma02g01403 319 CDD AP2 115 172 IPR001471 GO:0003700|GO:0006355
Cma02g01403 319 SUPERFAMILY DNA-binding domain 116 174 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01099 Cma-Chr2:6536635 Cma02g01403 Cma-Chr2:8122187 4.98E-41 dispersed
Cma02g01403 Cma-Chr2:8122187 Cma04g00708 Cma-Chr4:3589889 3.35E-84 dispersed
Cma15g01264 Cma-Chr15:8043670 Cma02g01403 Cma-Chr2:8122187 2.90E-169 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34525 PF00847 AP2 3.80E-14 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01403 - - csv:101210444 488.804