Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma02g01403 | ATGAATATGGATTTCGACTCTGTTTTTGACCTCCCTGTTAAGTTCACCGAGCATCGTAACCATGTTAAGCACTCTTCAATGCCGGAAATTACGCCGAGAGTTGTACGAATTTCCTTCACTGACGGTGACGCCACCGATTCCTCCAGTGATGATGAGAACGAAATGTTTGGTCGCCGCAGAGTGAAGAAGTTTGTGAATGAGATTACGATTGAGCCGTCTTGTTCTGGAGAAGGAAATGGAATCTGGGGTGTGAACAGATCGGCGAGAAATGGCCGGAGACGGTCGTCCGGGAAATGTGGGGTCTCGTCCAGGAGTCGTCGGTCGGTGAAGATGCCGGACGGGAAGAAGTTCCGCGGTGTGAGACAAAGACCGTGGGGAAAATGGGCTGCCGAAATCAGAGACCCACTGCGGCGCGTACGGGTGTGGCTGGGAACTTATGACACGGCAGAGGAAGCTGCCATGGTTTACGACAACGCCGCCATTCAACTCCGGGGTCCCGATGCACTGACCAATTTCACCACCCAATCGCCCAAAAAATGCTCCGCCTACGACTCCGGCGAAGAGTCGAACAACAACATTTGCTCTCCGACCTCAGTCCTCCGGTGTCCATCGCCTTCAAACGAAGAGGACCAATCTCAACTCCCCGGCGAGCCAGACAACTCGTCCGTATCGGAAAATTTCTCGTCGGAGTTCTCAGACTTCTCGAGCTACTCCGACACCTTCATTCCAGACGACATTTTCGCCTTCGAAACTTCGATTCCGACCTTGTTAGACGACGAGATTGGCCTACATCACCAAACTAATTTCTTCGGCGATGACAGTTTCTTCAACGGCGTGTTTCATAGTCCCATCGAAAAAACCGGGTTCGGGTTCGGGTTCGAGTACCCTACTCCCCCTACGGACGACTTCTTCCAAGACTTCAGCGACGTGTTCGGTTCGGATCCTCTCGTTGCCCTTTAA | 960 | 52.5 | MNMDFDSVFDLPVKFTEHRNHVKHSSMPEITPRVVRISFTDGDATDSSSDDENEMFGRRRVKKFVNEITIEPSCSGEGNGIWGVNRSARNGRRRSSGKCGVSSRSRRSVKMPDGKKFRGVRQRPWGKWAAEIRDPLRRVRVWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFTTQSPKKCSAYDSGEESNNNICSPTSVLRCPSPSNEEDQSQLPGEPDNSSVSENFSSEFSDFSSYSDTFIPDDIFAFETSIPTLLDDEIGLHHQTNFFGDDSFFNGVFHSPIEKTGFGFGFEYPTPPTDDFFQDFSDVFGSDPLVAL | 319 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 8122187 | 8123146 | - | CmaCh02G014030.1 | Cma02g01403 | 289154 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma02g01403 | 319 | Gene3D | AP2/ERF domain | 115 | 175 | IPR036955 | GO:0003700|GO:0006355 | |
Cma02g01403 | 319 | SMART | rav1_2 | 116 | 179 | IPR001471 | GO:0003700|GO:0006355 | |
Cma02g01403 | 319 | MobiDBLite | consensus disorder prediction | 182 | 227 | - | - | |
Cma02g01403 | 319 | PRINTS | Ethylene responsive element binding protein signature | 117 | 128 | IPR001471 | GO:0003700|GO:0006355 | |
Cma02g01403 | 319 | PRINTS | Ethylene responsive element binding protein signature | 139 | 155 | IPR001471 | GO:0003700|GO:0006355 | |
Cma02g01403 | 319 | Pfam | AP2 domain | 116 | 165 | IPR001471 | GO:0003700|GO:0006355 | |
Cma02g01403 | 319 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF2 | 12 | 315 | - | - | |
Cma02g01403 | 319 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 12 | 315 | - | - | |
Cma02g01403 | 319 | ProSiteProfiles | AP2/ERF domain profile. | 116 | 173 | IPR001471 | GO:0003700|GO:0006355 | |
Cma02g01403 | 319 | MobiDBLite | consensus disorder prediction | 85 | 118 | - | - | |
Cma02g01403 | 319 | CDD | AP2 | 115 | 172 | IPR001471 | GO:0003700|GO:0006355 | |
Cma02g01403 | 319 | SUPERFAMILY | DNA-binding domain | 116 | 174 | IPR016177 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g01099 | Cma-Chr2:6536635 | Cma02g01403 | Cma-Chr2:8122187 | 4.98E-41 | dispersed | |
Cma02g01403 | Cma-Chr2:8122187 | Cma04g00708 | Cma-Chr4:3589889 | 3.35E-84 | dispersed | |
Cma15g01264 | Cma-Chr15:8043670 | Cma02g01403 | Cma-Chr2:8122187 | 2.90E-169 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34525 | PF00847 | AP2 | 3.80E-14 | CL0081 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma02g01403 | - | - | csv:101210444 | 488.804 |