Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01404 ATGGAAGCTCTGTGGATTTTCAGCTTCGTTCTCGTTCTGGGGTTTGTTTTTGCGCCGATCAATGGCGACCCAGTTGAAGATAAGCGAGCTTTGCTTGATTTCGTGAAGAATCTTCCTCATTCTCGCTCTCTTAATTGGAATGCGGCTTCTCCTGTTTGCCATTACTGGATTGGTATAACTTGCAGTAAAGATGATTCTCGTGTTATAGCCGTTCGATTGCCCGGAGTTGGCTTCCACGGCCCGATTCCGGCGAACACTCTCAGCCGGCTCTCGGCGCTACAAATCTTGAGTCTACGATCCAACCGTATAACAGGGGATTTCCCATCTGATTTCTCAAATCTTATTAACTTGTCTTATCTTTATCTTCAGTTCAACAACTTCTCCGGGCCATTGCCTTCCAATTTCTCTGTTTGGAAGAATCTCACCTCTGTGAATCTCTCTAACAATGGCTTCAATGGCCGCATTCCTTATTCGCTTTCTAATCTTCCAGCACTCACGGGTTTGAGTCTCGCAAATAACTCTCTCTCAGGAGAAATCCCTGACCTCCAAATTCCCAAATTGCAGATTCTGGATTTATCCAACAACAATTTGAATGGGAGTGTGCCTAAATCATTACAGAGATTTCCAAGGTCTGTATTTGTAGGCAATGACATATCCTTTGATAGTTCTTCGCCAAACAATCCTCCCCTGCCCCCACCATTGCCTTTGTGGAATGAAAAGCCCAAGAATGCTGGAGGGCTTGGAGAAGCAGCATTATTAGGAATTATAATAGCTGGTGCTATTCTGGGGCTCTTAGCATTTGGCTTTCTGATACTTGTATGCTGCTCAAGAAGGAAGAGGGAAGCATATTCAGGGGATCTGCAGAAAGGTGGAATGTCGCCGGAGAAGGTGATATCAAGGACTCAAGATGCAAACAACAGATTGGTGTTCTTTGAGGGGTGCCATTATGCTTTTGACTTGGAGGATTTGTTGAGGGCTTCTGCTGAGGTGTTGGGGAAGGGGACTTTTGGTACTGCTTACAAAGCAGTTCTGGAGGATGCCACCACTGTTGTTGTTAAGAGGTTGAAGGATGTAAGTGCTGGGAAACGTGATTTTGAGCAGCAAATGGAGATTGTGGGCAGTATCAGGCACGAGAATGTGGCTGAGTTGAAGGCCTATTATTATTCCAAAGATGAGAAGCTGATGGTTTTTGATTTCTATGGTCAGGGTAGCGTCTCGGCTATGTTGCACGGTGAACGCGGAGAGGAAAAGACCCCATTAGATTGGGACACTAGACTGAGAATTGCAGTTGGTGCAGCACGAGGGATTGCTCGAGTCCATGCCGAAAATGGAGGGAAGCTAGTCCATGGCAATGTGAAATCCTCAAACATCTTTCTAAATTCTCAACAATACGGATGTGTGTCTGATCTCGGACTAGCAACCATAACAAGCTCACTCTCTCCACCTATATCCCGTGCTGCTGGTTACCGAGCCCCGGAAGTGACCGACACCCGCAAGGCAACACAGGCTTCAGATGTTTTCAGCTTCGGCGTGGTACTCCTCGAGCTTCTTACCGGAAAGTCTCCAATACACGCAACGGGTGGTGAAGAGATCGTCCACTTGGTGAGATGGGTTCACTCAGTTGTCCGAGAGGAGTGGACAGCTGAAGTATTTGATATACAGCTAATGAGGTATCCCAACATAGAGGAAGAAATGGTTGAGATGTTGCAGATAGCCCTATCATGTGTGGCCAGGATACCAGATCAGAGACCTAAAATGGCAGAAGTTGTGACAATGATCGAAACCGTTCGACCAATGGAAGCCGAGAATCGACCTTCTTCCACACATCAATCTGAAACTACAATGCCACAAGCTGTTGGGACAGAAAATTTAGCCTCTCAGCAAAACAACAAACACGCAGGAGGATCTCAAGAGGTTCCACTCTTTTGGAATTTGGCGATGGCTTCGAAGCGGATCTTGAAAGAGCTCAAGGATCTCCAGAAGGATCCTCCTACGTCTTGCAGTGCAGGCCCAGTAGCTGAAGACATGTTCCATTGGCAAGCAACAATTATGGGCCCTCCTGACAGTCCATATGCAGGAGGAGTATTTCTTGTCAACATTCATTTCCCTCCAGATTATCCATTTAAACCACCCAAGGTTGCATTCAGAACAAAGGTCTTCCATCCCAATATCAACAGCAACGGTAGCATATGCCTGGACATACTTAAGGAACAGTGGAGTCCTGCACTAACCATTTCTAAGGTGTTGCTTTCAATCTGTTCGCTGCTGACAGACCCGAATCCTGATGACCCTTTGGTGCCAGAGATTGCGCACATGTACAAGACTGACAGAAGCAAGTACGAGGCAACCGCCAGAAGCTGGACCCAGAAGTATGCCATGGGTTAG 2385 46.71 MEALWIFSFVLVLGFVFAPINGDPVEDKRALLDFVKNLPHSRSLNWNAASPVCHYWIGITCSKDDSRVIAVRLPGVGFHGPIPANTLSRLSALQILSLRSNRITGDFPSDFSNLINLSYLYLQFNNFSGPLPSNFSVWKNLTSVNLSNNGFNGRIPYSLSNLPALTGLSLANNSLSGEIPDLQIPKLQILDLSNNNLNGSVPKSLQRFPRSVFVGNDISFDSSSPNNPPLPPPLPLWNEKPKNAGGLGEAALLGIIIAGAILGLLAFGFLILVCCSRRKREAYSGDLQKGGMSPEKVISRTQDANNRLVFFEGCHYAFDLEDLLRASAEVLGKGTFGTAYKAVLEDATTVVVKRLKDVSAGKRDFEQQMEIVGSIRHENVAELKAYYYSKDEKLMVFDFYGQGSVSAMLHGERGEEKTPLDWDTRLRIAVGAARGIARVHAENGGKLVHGNVKSSNIFLNSQQYGCVSDLGLATITSSLSPPISRAAGYRAPEVTDTRKATQASDVFSFGVVLLELLTGKSPIHATGGEEIVHLVRWVHSVVREEWTAEVFDIQLMRYPNIEEEMVEMLQIALSCVARIPDQRPKMAEVVTMIETVRPMEAENRPSSTHQSETTMPQAVGTENLASQQNNKHAGGSQEVPLFWNLAMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKYAMG 794
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8128944 8137427 - CmaCh02G014040.1 Cma02g01404 289155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01404 794 ProSiteProfiles Protein kinase domain profile. 325 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g01404 794 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Cma02g01404 794 Gene3D Transferase(Phosphotransferase) domain 1 401 620 - -
Cma02g01404 794 SUPERFAMILY L domain-like 37 208 - -
Cma02g01404 794 ProSitePatterns Protein kinases ATP-binding region signature. 331 362 IPR017441 GO:0005524
Cma02g01404 794 Pfam Protein kinase domain 328 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g01404 794 Pfam Leucine Rich Repeat 186 207 IPR001611 GO:0005515
Cma02g01404 794 Gene3D Phosphorylase Kinase; domain 1 292 399 - -
Cma02g01404 794 Pfam Leucine rich repeat 82 127 IPR001611 GO:0005515
Cma02g01404 794 Gene3D Ribonuclease Inhibitor 25 224 IPR032675 -
Cma02g01404 794 PANTHER OS05G0588300 PROTEIN 21 607 - -
Cma02g01404 794 Pfam Ubiquitin-conjugating enzyme 651 787 IPR000608 -
Cma02g01404 794 SUPERFAMILY UBC-like 644 793 IPR016135 -
Cma02g01404 794 CDD UBCc 649 788 IPR000608 -
Cma02g01404 794 PANTHER PROTEIN, PUTATIVE-RELATED 21 607 - -
Cma02g01404 794 SUPERFAMILY Protein kinase-like (PK-like) 329 594 IPR011009 -
Cma02g01404 794 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 720 735 IPR023313 -
Cma02g01404 794 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 647 793 IPR000608 -
Cma02g01404 794 SMART ubc_7 650 793 - -
Cma02g01404 794 Gene3D Ubiquitin Conjugating Enzyme 643 794 IPR016135 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01404 Cma15g01263 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00921 Cma-Chr1:5601150 Cma02g01404 Cma-Chr2:8128944 4.21E-95 dispersed
Cma02g00682 Cma-Chr2:4175665 Cma02g01404 Cma-Chr2:8128944 0 dispersed
Cma02g01096 Cma-Chr2:6522935 Cma02g01404 Cma-Chr2:8128944 0 dispersed
Cma02g01098 Cma-Chr2:6533021 Cma02g01404 Cma-Chr2:8128944 1.19E-99 dispersed
Cma02g01404 Cma-Chr2:8128944 Cma16g00080 Cma-Chr16:351159 0 dispersed
Cma11g01384 Cma-Chr11:9122039 Cma02g01404 Cma-Chr2:8128944 1.39E-08 dispersed
Cma14g02086 Cma-Chr14:14433777 Cma02g01404 Cma-Chr2:8128944 1.42E-95 dispersed
Cma16g00079 Cma-Chr16:347406 Cma02g01404 Cma-Chr2:8128944 1.12E-102 dispersed
Cma20g00301 Cma-Chr20:1476266 Cma02g01404 Cma-Chr2:8128944 7.32E-102 dispersed
Cma15g01263 Cma-Chr15:8026674 Cma02g01404 Cma-Chr2:8128944 2.63E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68375 PF00069 Pkinase 3.60E-33 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01404 - - csv:101211836 1066.22