Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01416 ATGACGGAGCATCACGAGCACGAGCATGAGGAGCCCAAAGCCGAGTCGTTGATTGACAAGATTGCCGAGAAGATTCACGCTCATGATTCCTCTTCTTCCGATTCCGAGGATGATAAGGGGAGTGCTTCTGCTACTATCAAATCTAAGATTTATCGCCTCTTCGGCAGGGAAAGGCCCGTCCACAAGGTTTTTGGTGGTGGGAAACCGGCTGATATCTTCCTGTGGAGAAACAAAAAGGTCTCCGGTGGAGTTCTAGGAGGAGCCACAGTTGCATGGATTTTGTTTGAGCTGCTTGAGTATCACTTTCTGACCTTGATTTGCCACATTTTGATGGCTGCTCTGGCAGTAGTGTTTTTGTGGTCTAATGCTTCTTTCTTCATTAACAAGTCTCTGCCACACATCCCTCAAGTTCACATTCCAGAGGGGCCAGTTAAAGAGATTGCCTCTGCTTTGAGAGTTGAGATCAATAGGGGCATCGCTGTGTTGAGAGAAATTGCATCTGGAAGAGATCTGAAGAGCTTTCTTTCTGCAATTGCTGGTTTGTGGGTTCTGTCCATCGTAGGAAGTTGGTTCAACTTCCTTACCCTGCTATATATTGGAGTCATTTTGCTCTTCACTGTGCCTGTGTTCTACGAGAAATACGACGACAAGGTCGATGCGTATGCAGAGAAGGCAATGGCAGAGCTGAAGAAGCAGTATGCAGTGTTTGATGCAAAAGTGTTGTCTAAAATCCCAAGAGGACCACTGAAGGACAAGAAGATTGCCTGA 768 46.48 MTEHHEHEHEEPKAESLIDKIAEKIHAHDSSSSDSEDDKGSASATIKSKIYRLFGRERPVHKVFGGGKPADIFLWRNKKVSGGVLGGATVAWILFELLEYHFLTLICHILMAALAVVFLWSNASFFINKSLPHIPQVHIPEGPVKEIASALRVEINRGIAVLREIASGRDLKSFLSAIAGLWVLSIVGSWFNFLTLLYIGVILLFTVPVFYEKYDDKVDAYAEKAMAELKKQYAVFDAKVLSKIPRGPLKDKKIA 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8175229 8177585 - CmaCh02G014160.1 Cma02g01416 289167

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01416 255 Pfam Reticulon 70 225 IPR003388 -
Cma02g01416 255 PANTHER RETICULON-LIKE PROTEIN 6 254 - -
Cma02g01416 255 PANTHER RETICULON 6 254 IPR045064 GO:0009617
Cma02g01416 255 ProSiteProfiles Reticulon domain profile. 69 255 IPR003388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01416 - - - csv:101212804 462.611
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g01416 Cma15g01257 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01416 Cma-Chr2:8175229 Cma14g02072 Cma-Chr14:14377448 1.76E-105 dispersed
Cma06g00252 Cma-Chr6:1261383 Cma02g01416 Cma-Chr2:8175229 1.80E-39 dispersed
Cma06g01617 Cma-Chr6:10055784 Cma02g01416 Cma-Chr2:8175229 1.00E-10 dispersed
Cma14g00090 Cma-Chr14:407067 Cma02g01416 Cma-Chr2:8175229 1.53E-42 dispersed
Cma15g01257 Cma-Chr15:7986896 Cma02g01416 Cma-Chr2:8175229 3.01E-154 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g61 Blo02g01126 . Bda06g00125 Bda08g00499 Bpe05g00665 Bpe07g00090 . . Cmo06g01077 . Cma02g01416 Cma15g01257 Car02g01186 Car15g01134 . . Cpe05g00366 . . . . . . . . . . . . . . Cone8ag0269 Cone12ag0275 Cone6ag0819 Cone9ag0818 . Csa05g00229 Chy09g01271 . . . . . . . . Bma12g00060 . Cmo02g01447 Cmo15g01325 . . Car06g00886 . . Cpe13g00128 Bhi12g00174 . . Lac11g2034 Hepe06g1503 . Lcy12g1596 Cla01g00212 Cam01g0217 Cec01g0211 Cco01g0215 Clacu01g0212 Cmu01g0206 Cre09g2301 Lsi09g00200 . . Cme09g01814
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000326 4 3 4 3 4 4 7 4 4 5 4 4 7 3 4 7 4 9 7 4 4 4 4 4 4 4 4 6 4 3 136
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g01416 Cma_Chr02 FPKM 74.1539 84.432861 85.281754 90.930382 59.989662 60.221931 57.525562 97.352966 103.183563 107.611084