Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01424 ATGGAGACGACGGGGTTATTCAAATCCTCCATGAGATTTTTCTCCGATCAAGAGCTCTGCTACGCCGATATCCTCACTCCTCAAGAGGCCCTTGCGAGAATTCAAGTTGCGGTCCTCAATTTCCTCAGAATTCTCAGTTCCTCTACTCCTGCCATCTCAAATCTTCCTCTGATTGATCGAAGTTCGAACAACAGCCGAGTTAATCAAGGAATTTTAACCGATGAATCTTGGATTTTCCTTTCGCACTCCTTTTCTACGCGGTCTTTGATGAGAGCCAATGCTGCTAAGGCCTTTGTTAGAGTATGGAAGCTGATGGAGATGTGTTCTCAGATCTTGCTTCAGGAAAAGCGAGTGACGCAGAGGGAGCTCTTCTACAAGCTGCTCTGTGATTCACCTGCTTATTTCCCCACTCAGTTGCATGTCAATAGAACAATTCAAGATGTTGTAACATTACTTCGATGCAGCCGTTTCAGCCTTGGAGTTATGGCATCTAGCAGGGGACTTGTCGCCGGCCGTCTTTTGCTTCAGGCACATTGTTATGAGCCAGAACAAGAAACTGTGGACTGCGCTGCCTGTGGTTCTTCTGGATATGCCATTTCTGGTGACTTGGACCTGCTGCAGAAGTTGACTCTGAAGACTGACGCTCGGTATGTAATTGTCATCGAAAAGCATGCCATCTTCCAGCGGCTGGTGGAGGATCGAGTTTTCAATCACATTCCCAGTATTCTTATCACTGCCAAAGGATATCCAGACATAGCAACAAGGTATTTTCTTCACAGAATCAGCAAAACGTTTCCCCACCTGCCAATTTTCGGCCTTGTTGATTGGAACCCTGCTGGGTTGGCTATATTATGTACCTTCAAGTATGGAAGTATCGGGATGGGCTTAGAGGCATACAGATACGCTTGCAATGTAAAATGGTTAGGCATGCGAGGAGACGATGTACAACTTATACCACAAGAATCTTTGGTTTCACTCAAGCCCCGGGACCTACAAATTGCCAAAAGCTTGATGTCCTCGGAAATATTACAGGAGAATTATCGAGAAGAGCTGACCTTAATGGTTGAGGGAGGGCAAAAGGCCGAACTTGAAGCTTTGTACCACAATGGATTTGATTACTTGCAGAAGTACATAGTTAAAAAGATTATTCAATTTAATTACATCTGA 1167 44.82 METTGLFKSSMRFFSDQELCYADILTPQEALARIQVAVLNFLRILSSSTPAISNLPLIDRSSNNSRVNQGILTDESWIFLSHSFSTRSLMRANAAKAFVRVWKLMEMCSQILLQEKRVTQRELFYKLLCDSPAYFPTQLHVNRTIQDVVTLLRCSRFSLGVMASSRGLVAGRLLLQAHCYEPEQETVDCAACGSSGYAISGDLDLLQKLTLKTDARYVIVIEKHAIFQRLVEDRVFNHIPSILITAKGYPDIATRYFLHRISKTFPHLPIFGLVDWNPAGLAILCTFKYGSIGMGLEAYRYACNVKWLGMRGDDVQLIPQESLVSLKPRDLQIAKSLMSSEILQENYREELTLMVEGGQKAELEALYHNGFDYLQKYIVKKIIQFNYI 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8219948 8222494 + CmaCh02G014240.1 Cma02g01424 289175

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01424 388 CDD TOPRIM_TopoIIB_SPO 216 373 IPR034136 -
Cma02g01424 388 Pfam Type IIB DNA topoisomerase 96 161 IPR013049 GO:0003677|GO:0003824|GO:0005524|GO:0005694|GO:0006259
Cma02g01424 388 PRINTS DNA topoisomerase VI subunit A family signature 242 263 IPR002815 GO:0003677|GO:0003918|GO:0005694
Cma02g01424 388 PRINTS DNA topoisomerase VI subunit A family signature 275 291 IPR002815 GO:0003677|GO:0003918|GO:0005694
Cma02g01424 388 PRINTS DNA topoisomerase VI subunit A family signature 218 235 IPR002815 GO:0003677|GO:0003918|GO:0005694
Cma02g01424 388 PRINTS DNA topoisomerase VI subunit A family signature 156 171 IPR002815 GO:0003677|GO:0003918|GO:0005694
Cma02g01424 388 PRINTS DNA topoisomerase VI subunit A family signature 138 155 IPR002815 GO:0003677|GO:0003918|GO:0005694
Cma02g01424 388 Gene3D - 18 164 IPR036388 -
Cma02g01424 388 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11 16 387 - -
Cma02g01424 388 Gene3D - 165 388 - -
Cma02g01424 388 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11 16 387 IPR002815 GO:0003677|GO:0003918|GO:0005694
Cma02g01424 388 SUPERFAMILY DNA topoisomerase IV, alpha subunit 95 388 IPR036078 GO:0003677|GO:0005694
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01424 K10878 SPO11; meiotic recombination protein SPO11 - csv:101213596 674.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01424 Cma-Chr2:8219948 Cma03g00468 Cma-Chr3:4733481 2.83E-52 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g44 . . . . . . . Bma14g00597 . . Cma02g01424 . Car02g01193 . . . Cpe05g00362 . . . . . . . . . . . . . . Cone8ag0276 . . . . Csa05g00240 . . . . . . . Bpe11g00672 . . . Cmo02g01458 . . . . . . . Bhi12g00322 . . . . . Lcy12g1610 . . . . . . . . . . Cme09g01800
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006132 0 6 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g01424 Cma_Chr02 FPKM 4.32683 4.792476 7.192458 6.829685 1.983979 1.52274 2.940797 39.111221 39.809612 40.118256