Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01425 ATGGCTGCCCCCGAAGCTCCTCTCTGCTATGTCGGCGTCGCAAGACAATCCGCAGCTTTTCGCCTTATGAAACAGATGGGGTGGGAAGAAGGAGAAGGGCTCGGAAAAGACAAGCAAGGGATCAAAGGCCATGTTAGAGTTAAAAATAAACAAGACACTGCCGGAATTGGCACTGAGAAGCAGAACAGTTGGGCTTTTGATACAACACAATTTGACAACATCTTGAAGAGACTGAAAGTGCAAGCAGTACAAAACACCGAGGAAGCTGCAAAGAAAGATGGCACTTCGGTGGAAACTGTGGATGATGATCAGGATCTGGTTGTCAAGGCTACACGACCACAAGGAAGATATAAGAGAAGAGAGAGAGGAAAGCTCGTCAATGCATATTCTTCCAAGGACCTTGAAGGGATCCTTGCAAAAAAGGTGGAGGAATTACCAGAAACATGTCCTAATGCAGTCACGGAACTGGAGTCATCAGAGGAATCTGAAATTGAAGTTATTGCCATTGAAGAAAACACAGTCACCATTTCTCCTGATTGGTGGGGCTATAAATATGGCTTCATTTCTGGAGGATTTTTGGGTGCGGAATCTAAACGAAGAAAATCCCTTCAAACCAATAATGAGAGAACTGCCTTTCATGAAGATGATCAAGAGAATCTATACAAGCTTGTTCAAGATAAATCCACAACAGGAAAGCAAGGACTGGGTATTAAGAGTAGACCAAAGAAAATAGCTGGCTGCTACTTTGAGGGGAAAAAGACTTCCTTTGATGAAAGTGACGACGAAGACTCTGGTGATGCCGCCCCTCCTCCCATGAAACGGAAATATGATGACTCTTTCAGCACACAAAAATCTGGCGGGCAGCAGAAAGTGAAGTTGAGAAAATTGTGTAAAACAATTCTTAGCCAAGCACCTGGAGAATGTTTAAAGCTGAAACAGCTGAAATCTTTCATTGATGAACGCGCCACTTCTGTTTTTGCCAACTGTTCTTCCAAGAAAGATGCTCTTGCTTACTTGAAACAGAAGATTGAGAGCAGTGGGAAGTTTTTGGTGGAAGGGAAAAGAGTAACTCTGCGGTCGAAGGAGTAG 1089 43.71 MAAPEAPLCYVGVARQSAAFRLMKQMGWEEGEGLGKDKQGIKGHVRVKNKQDTAGIGTEKQNSWAFDTTQFDNILKRLKVQAVQNTEEAAKKDGTSVETVDDDQDLVVKATRPQGRYKRRERGKLVNAYSSKDLEGILAKKVEELPETCPNAVTELESSEESEIEVIAIEENTVTISPDWWGYKYGFISGGFLGAESKRRKSLQTNNERTAFHEDDQENLYKLVQDKSTTGKQGLGIKSRPKKIAGCYFEGKKTSFDESDDEDSGDAAPPPMKRKYDDSFSTQKSGGQQKVKLRKLCKTILSQAPGECLKLKQLKSFIDERATSVFANCSSKKDALAYLKQKIESSGKFLVEGKRVTLRSKE 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8222303 8227127 - CmaCh02G014250.1 Cma02g01425 289176

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01425 362 MobiDBLite consensus disorder prediction 255 287 - -
Cma02g01425 362 Pfam G-patch domain 17 59 IPR000467 GO:0003676
Cma02g01425 362 PANTHER BNAA09G11800D PROTEIN 1 266 - -
Cma02g01425 362 PANTHER BNAA09G11800D PROTEIN 288 361 - -
Cma02g01425 362 MobiDBLite consensus disorder prediction 266 280 - -
Cma02g01425 362 PANTHER G PATCH DOMAIN CONTAINING PROTEIN 1 266 - -
Cma02g01425 362 PANTHER G PATCH DOMAIN CONTAINING PROTEIN 288 361 - -
Cma02g01425 362 ProSiteProfiles G-patch domain profile. 15 61 IPR000467 GO:0003676
Cma02g01425 362 SMART G-patch_5 13 59 IPR000467 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01425 K11135 PINX1; Pin2-interacting protein X1 - csv:101213045 587.03
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g43 . . . . . . . Bma14g00598 . . Cma02g01425 . Car02g01194 . . . Cpe05g00361 . . . . . . . . . . . . . . . . Cone6ag0811 Cone9ag0810 . . Chy09g01262 . . . . . . Bpe11g00671 . . . Cmo02g01459 . . . . . . . . . . . . . . Cla01g00227 Cam01g0234 Cec01g0225 Cco01g0237 Clacu01g0229 Cmu01g0222 Cre09g2287 Lsi09g00217 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011517 0 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g01425 Cma_Chr02 FPKM 21.116924 21.535589 29.857496 28.420639 27.967731 24.226856 28.304457 43.018131 44.99501 45.256638