Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01429 ATGGCTACTAAAGATTCGAGTTCTGCGAGTGAGGGCAAGATTAAAGGGGTTCTCACCCATGGCGGCCGATATGTGCAGTATAACGTCTACGGTAACTTGTTTGAGGTTTCGGCTAAGTATGTTCCTCCTTTGCGACCCATTGGTAGAGGCGCTTATGGTCTTGTTTGCGCTGCTGTAAATTCAGAGACACATGAAGAGGTTGCTATCAAGAAAATTGGAAATGCATTTGATAATATAATCGATGCCAAGAGGACATTGAGAGAAATTAAGCTTCTTTGCCACATGGAACATGAAAATATTATCGCCATCAGAGACATCATTCGACCCCCAAAAAGAGAGGTCTTTAATGATGTGTACATTGTTTACGAGTTGATGGATACCGATCTCCATCAAATAATTCGCTCTGACCAATCACTGACAGATGACCATTGCCAGTACTTTATGTATCAGTTATTGCGCGGGCTGAAATATGTTCATTCAGCCAAGGTCCTGCACCGTGATCTGAAGCCAAGCAACCTGCTACTGAATGCAAATTGCGACCTTAAAATTGGAGACTTTGGGTTGGCAAGGACAACGTCTGAAACTGACTTCATGACTGAATATGTGGTCACTCGTTGGTACCGAGCGCCAGAATTGCTGCTCAATTGTTCAGAGTACACTGCCGCCATTGATGTCTGGTCTGTTGGATGCATACTTGGTGAGATCATGACCCGAGAGCCTCTCTTCCCTGGAAAAGATTATGTTCATCAACTAAGACTTATAACTGAGCTACTTGGATCACCAGATGATGCCAGTCTAGGATTTCTTCGAAGCGATAACGCTCGAAGATATGTCAAGCAGCTTCCTCAGTACAAGAAACAACAATTCTCAACTAGATTTCCCAACATGTCTCCAGCTGCCTTGGATCTTCTAGAAAAGATGCTCGTGTTTGATCCAAACAAACGCATCACAGTTGAGGAGGCACTCTGTCATCCATACTTGCAATCTCTTCACGACATCAACGACGAGCCAGTGTGTGGCAGACCTTTCAATTTCAATTTCGAGCAACCATCGTGCACTGAAGAGCATATCAAAGAACTGATCTGGAAAGAATGTGTCCGGTTCAATCCTGATGAATCAGCGAGGAGGACGACCCTTTGCGTTTAA 1146 44.15 MATKDSSSASEGKIKGVLTHGGRYVQYNVYGNLFEVSAKYVPPLRPIGRGAYGLVCAAVNSETHEEVAIKKIGNAFDNIIDAKRTLREIKLLCHMEHENIIAIRDIIRPPKREVFNDVYIVYELMDTDLHQIIRSDQSLTDDHCQYFMYQLLRGLKYVHSAKVLHRDLKPSNLLLNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDVWSVGCILGEIMTREPLFPGKDYVHQLRLITELLGSPDDASLGFLRSDNARRYVKQLPQYKKQQFSTRFPNMSPAALDLLEKMLVFDPNKRITVEEALCHPYLQSLHDINDEPVCGRPFNFNFEQPSCTEEHIKELIWKECVRFNPDESARRTTLCV 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8238896 8243079 + CmaCh02G014290.1 Cma02g01429 289180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01429 381 SUPERFAMILY Protein kinase-like (PK-like) 44 335 IPR011009 -
Cma02g01429 381 Gene3D Transferase(Phosphotransferase) domain 1 125 354 - -
Cma02g01429 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
Cma02g01429 381 SMART serkin_6 41 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g01429 381 CDD STKc_TEY_MAPK 34 370 - -
Cma02g01429 381 ProSitePatterns Protein kinases ATP-binding region signature. 47 71 IPR017441 GO:0005524
Cma02g01429 381 ProSiteProfiles Protein kinase domain profile. 41 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g01429 381 Gene3D Phosphorylase Kinase; domain 1 24 364 - -
Cma02g01429 381 ProSitePatterns MAP kinase signature. 76 179 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cma02g01429 381 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 11-RELATED 16 372 - -
Cma02g01429 381 Pfam Protein kinase domain 45 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g01429 381 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 16 372 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01429 Cma15g01248 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01429 Cma-Chr2:8238896 Cma08g00890 Cma-Chr8:5512522 0 dispersed
Cma15g01248 Cma-Chr15:7927658 Cma02g01429 Cma-Chr2:8238896 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68376 PF00069 Pkinase 9.90E-72 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01429 - - csv:101214254 758.829