Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma02g01429 | ATGGCTACTAAAGATTCGAGTTCTGCGAGTGAGGGCAAGATTAAAGGGGTTCTCACCCATGGCGGCCGATATGTGCAGTATAACGTCTACGGTAACTTGTTTGAGGTTTCGGCTAAGTATGTTCCTCCTTTGCGACCCATTGGTAGAGGCGCTTATGGTCTTGTTTGCGCTGCTGTAAATTCAGAGACACATGAAGAGGTTGCTATCAAGAAAATTGGAAATGCATTTGATAATATAATCGATGCCAAGAGGACATTGAGAGAAATTAAGCTTCTTTGCCACATGGAACATGAAAATATTATCGCCATCAGAGACATCATTCGACCCCCAAAAAGAGAGGTCTTTAATGATGTGTACATTGTTTACGAGTTGATGGATACCGATCTCCATCAAATAATTCGCTCTGACCAATCACTGACAGATGACCATTGCCAGTACTTTATGTATCAGTTATTGCGCGGGCTGAAATATGTTCATTCAGCCAAGGTCCTGCACCGTGATCTGAAGCCAAGCAACCTGCTACTGAATGCAAATTGCGACCTTAAAATTGGAGACTTTGGGTTGGCAAGGACAACGTCTGAAACTGACTTCATGACTGAATATGTGGTCACTCGTTGGTACCGAGCGCCAGAATTGCTGCTCAATTGTTCAGAGTACACTGCCGCCATTGATGTCTGGTCTGTTGGATGCATACTTGGTGAGATCATGACCCGAGAGCCTCTCTTCCCTGGAAAAGATTATGTTCATCAACTAAGACTTATAACTGAGCTACTTGGATCACCAGATGATGCCAGTCTAGGATTTCTTCGAAGCGATAACGCTCGAAGATATGTCAAGCAGCTTCCTCAGTACAAGAAACAACAATTCTCAACTAGATTTCCCAACATGTCTCCAGCTGCCTTGGATCTTCTAGAAAAGATGCTCGTGTTTGATCCAAACAAACGCATCACAGTTGAGGAGGCACTCTGTCATCCATACTTGCAATCTCTTCACGACATCAACGACGAGCCAGTGTGTGGCAGACCTTTCAATTTCAATTTCGAGCAACCATCGTGCACTGAAGAGCATATCAAAGAACTGATCTGGAAAGAATGTGTCCGGTTCAATCCTGATGAATCAGCGAGGAGGACGACCCTTTGCGTTTAA | 1146 | 44.15 | MATKDSSSASEGKIKGVLTHGGRYVQYNVYGNLFEVSAKYVPPLRPIGRGAYGLVCAAVNSETHEEVAIKKIGNAFDNIIDAKRTLREIKLLCHMEHENIIAIRDIIRPPKREVFNDVYIVYELMDTDLHQIIRSDQSLTDDHCQYFMYQLLRGLKYVHSAKVLHRDLKPSNLLLNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDVWSVGCILGEIMTREPLFPGKDYVHQLRLITELLGSPDDASLGFLRSDNARRYVKQLPQYKKQQFSTRFPNMSPAALDLLEKMLVFDPNKRITVEEALCHPYLQSLHDINDEPVCGRPFNFNFEQPSCTEEHIKELIWKECVRFNPDESARRTTLCV | 381 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 8238896 | 8243079 | + | CmaCh02G014290.1 | Cma02g01429 | 289180 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma02g01429 | 381 | SUPERFAMILY | Protein kinase-like (PK-like) | 44 | 335 | IPR011009 | - | |
Cma02g01429 | 381 | Gene3D | Transferase(Phosphotransferase) domain 1 | 125 | 354 | - | - | |
Cma02g01429 | 381 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 163 | 175 | IPR008271 | GO:0004672|GO:0006468 | |
Cma02g01429 | 381 | SMART | serkin_6 | 41 | 327 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma02g01429 | 381 | CDD | STKc_TEY_MAPK | 34 | 370 | - | - | |
Cma02g01429 | 381 | ProSitePatterns | Protein kinases ATP-binding region signature. | 47 | 71 | IPR017441 | GO:0005524 | |
Cma02g01429 | 381 | ProSiteProfiles | Protein kinase domain profile. | 41 | 327 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma02g01429 | 381 | Gene3D | Phosphorylase Kinase; domain 1 | 24 | 364 | - | - | |
Cma02g01429 | 381 | ProSitePatterns | MAP kinase signature. | 76 | 179 | IPR003527 | GO:0004707|GO:0005524|GO:0006468 | |
Cma02g01429 | 381 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE 11-RELATED | 16 | 372 | - | - | |
Cma02g01429 | 381 | Pfam | Protein kinase domain | 45 | 327 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma02g01429 | 381 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 16 | 372 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma02g01429 | Cma15g01248 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g01429 | Cma-Chr2:8238896 | Cma08g00890 | Cma-Chr8:5512522 | 0 | dispersed | |
Cma15g01248 | Cma-Chr15:7927658 | Cma02g01429 | Cma-Chr2:8238896 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68376 | PF00069 | Pkinase | 9.90E-72 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma02g01429 | - | - | csv:101214254 | 758.829 |