Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01431 ATGGCTCGAGAGCTTTGTGAAGGTGAAGAGAAACCGAACGAGATGGTAGTTGGAGGAGGAGGATTTTACTACAATTCGAATTCTAACTTGAACATCCAAACCCAATTCACGAGCCAGATCCAAACTGGGTTTGGATCCGGCGGCGATACGGCGGAGATGTTCAATTTGGGGACGAACGAGTCAACCGGCGGCGATGAGTTTCATCAGAACATGATGGTGGTTGGGCCGTGGGGGACAGCAGCGCAAGACAGCAATAACAGATTCCATTTAGTCGATGATGATTCTGCTTTGAGATGCGTGTTTCCATGTGAACCCAATGAGAGGCCAAGCCAAGGCCTTTCTTTGTCTCTTAGTTCCTCTAATCCTTCTTCTATTGGCTTACAATCTTTTGAACTCAGACCCCAACAAAATCAACACCAATCATCGTCTCTCCCCATTTTTCAGCTTCGAAACTCCAGGTTTCTGGCCCCAGCTCAGGACCTTCTTTATGAGTTTTGTAGCCTTGGAATCACCATTAACAACAACAACAAACAAGGCCTTGATTTTTCTTCTTCACCAAAACACAAAGGGAATAGGCCAAAACAATGGGAAATGGAAGATGGGTCTTCTTCTACCAAGATTTCTCTCCAATCACTTGATTTCATGGACTTGCAAAGGAGAAAAACCAAGCTCTTTTCCATGCTTGAAGAGGTTGAAAGAAGGTATAGGCATTACTGCGAGCAAATGAAGGCGGTGGTGGCATCATTCGAGGCGGTGGCAGGGAGTGGGGCGGCGAGGGTATACTCGGCGTTGGCTTCGAAGGCGATGTCCAGGCATTTTAGGTGCCTAAAAGATGGGATTGTGGGACAAATTCAGGCCACAAAAAAGGCAATAGAAGAAAAGGATCCAATTACTCCAGGCACCACAAGAGGAGAAACGCCAAGGCTTAAAGTCATCGATCAAGCTTTAAGGCAACAAAGAGCTTTCCATCAAATAAGCATGATGGAGAGCCACCCATGGCGCCCTCAACGTGGCCTCCCTGAGCGTTCTGTTTCTGTTCTTCGCGCTTGGCTTTTCGAACACTTTCTTCACCCGTACCCTAGCGATGTGGATAAACATATTTTAGCTCGCCAAACTGGTCTCTCAAGAAGCCAGGTGTCGAATTGGTTCATTAATGCGAGGGTGAGGCTGTGGAAGCCAATGGTGGAAGAGATGTATTTAGAAGAAACCAAGGAGCAAGGAGAAGAAATCAACAACAATTTTAATGGCCATTCTTCCGATGGGGTGGCGGATTTCGACGACGAAATCGATGGTCATCGATTGATCCCGACACGGTTGGTGGATCAAAAGCCAACGCCAGACCAACTCTTGAGAATTGAGTCGGAATGTATGTCTTCAATCATCTCTAACAACTCAGAAAAGAACGGTTCAAGAAGCATGAGAGCAATGGAAAACCAGAGTTTTGGGCGAGTTGGCGCTGATGCATTTGGCACAGTGGAGCTTGACTTCTCATCGTACAACCACCACCACTCTAGTAGCGGTGGCGGCGGAGTGTCGTTGACATTAGGGTTACAGCAACATGCAACACAAAGCTCAGTTTTCTTCAGAAGTGATGAAATGGAAGAGTGTGAACCGGTTCAATATTCACTTTTAGATGGAGAAACTCAGAATCTTCCTTACAGAAATTTGATGGGTGCTCAATTGCTTCATGACTTGGCCGAATAA 1704 46.36 MARELCEGEEKPNEMVVGGGGFYYNSNSNLNIQTQFTSQIQTGFGSGGDTAEMFNLGTNESTGGDEFHQNMMVVGPWGTAAQDSNNRFHLVDDDSALRCVFPCEPNERPSQGLSLSLSSSNPSSIGLQSFELRPQQNQHQSSSLPIFQLRNSRFLAPAQDLLYEFCSLGITINNNNKQGLDFSSSPKHKGNRPKQWEMEDGSSSTKISLQSLDFMDLQRRKTKLFSMLEEVERRYRHYCEQMKAVVASFEAVAGSGAARVYSALASKAMSRHFRCLKDGIVGQIQATKKAIEEKDPITPGTTRGETPRLKVIDQALRQQRAFHQISMMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEETKEQGEEINNNFNGHSSDGVADFDDEIDGHRLIPTRLVDQKPTPDQLLRIESECMSSIISNNSEKNGSRSMRAMENQSFGRVGADAFGTVELDFSSYNHHHSSSGGGGVSLTLGLQQHATQSSVFFRSDEMEECEPVQYSLLDGETQNLPYRNLMGAQLLHDLAE 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8246912 8250913 - CmaCh02G014310.1 Cma02g01431 289182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01431 567 Pfam Associated with HOX 149 280 IPR006563 -
Cma02g01431 567 CDD homeodomain 333 394 IPR001356 GO:0003677
Cma02g01431 567 MobiDBLite consensus disorder prediction 179 203 - -
Cma02g01431 567 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 40 531 - -
Cma02g01431 567 Gene3D - 336 398 - -
Cma02g01431 567 SUPERFAMILY Homeodomain-like 334 400 IPR009057 -
Cma02g01431 567 ProSiteProfiles 'Homeobox' domain profile. 330 393 IPR001356 GO:0003677
Cma02g01431 567 PANTHER HOMEOBOX PROTEIN BEL1 HOMOLOG 40 531 - -
Cma02g01431 567 Pfam Homeobox KN domain 350 389 IPR008422 GO:0003677|GO:0006355
Cma02g01431 567 SMART HOX_1 333 397 IPR001356 GO:0003677
Cma02g01431 567 SMART prehox3 143 282 IPR006563 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01431 Cma15g01244 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01431 Cma-Chr2:8246912 Cma20g01145 Cma-Chr20:9080279 2.05E-101 dispersed
Cma15g01244 Cma-Chr15:7909711 Cma02g01431 Cma-Chr2:8246912 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34527 PF07526 POX 7.60E-45 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01431 - - cmo:103482774 780.015