Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01434 ATGGGCTTCCCTGCAAGCTACACTGAGCTGCTTCTCCCGAAGCTCTTCATCCATGTACTCTCCTTACTCGGCTTCCTCAGGAAGCTCATCTCCCTCTTGTTTCGCCTTCTAGGGCTCCAGGATTTTCTCGAACCGGACATTCCTTGGTCTAATCATTCTGATTCTTTTCCGACGGGACCATTGACGGACCTCGATCCTCTTTCCGCTGCCGTTCTCCGTGAGATTCTCCCTGTCGTTAGGTTCTCTGAACTTTTGGATCCGCCGGAGAGCTGCGCTGTTTGTCTCTACGAGTTCGAGACCGACGACGAGATCCGCCGCCTCGCCAACTGTCGCCACATCTTCCACCGCGGATGCCTCGATCGGTGGATCGGTTACGGCCAGAGGACCTGCCCGCTGTGCCGGACGGTGTTCATTCCGCCCGATTTGCGGACTGGTGGTTGTAATTTTGACGATAGGCCTTGGGAGGATTCGGAACTCTTCGAAGCACTCCACACTGATTCTTCTTCATCCTCGACGCCGACTCTTCTTAGCGCTGGTTTGTAG 543 55.06 MGFPASYTELLLPKLFIHVLSLLGFLRKLISLLFRLLGLQDFLEPDIPWSNHSDSFPTGPLTDLDPLSAAVLREILPVVRFSELLDPPESCAVCLYEFETDDEIRRLANCRHIFHRGCLDRWIGYGQRTCPLCRTVFIPPDLRTGGCNFDDRPWEDSELFEALHTDSSSSSTPTLLSAGL 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8262304 8262846 + CmaCh02G014340.1 Cma02g01434 289185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01434 180 PANTHER - 1 143 - -
Cma02g01434 180 CDD RING-H2 91 134 - -
Cma02g01434 180 ProSiteProfiles Zinc finger RING-type profile. 91 134 IPR001841 -
Cma02g01434 180 SUPERFAMILY RING/U-box 72 140 - -
Cma02g01434 180 SMART ring_2 91 133 IPR001841 -
Cma02g01434 180 Pfam Ring finger domain 90 134 IPR001841 -
Cma02g01434 180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 137 IPR013083 -
Cma02g01434 180 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 143 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01434 Cma-Chr2:8262304 Cma17g00450 Cma-Chr17:2675880 3.89E-40 dispersed
Cma02g01434 Cma-Chr2:8262304 Cma08g00893 Cma-Chr8:5541260 5.82E-40 transposed
Cma02g01434 Cma-Chr2:8262304 Cma14g02051 Cma-Chr14:14282495 2.76E-40 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01434 K16281 - csv:101215533 291.582