Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01438 ATGGGAGGTTGCTGCTGTTGTTCCTCAAGAGGAACAGAATCAAATATTACACCAGGCTACTATTATTACCCAAGAGCATCGGAGGAGCATGTTCCCTTGTCATCTCCACTTAGTGCTACCCCAGCATTTCCAACGGGGATTTTGGTTGATACAAATCTGGACACATCAATTCCGGACACTTATAGATCACCCCCATTGCCTATCCCGTATGATGTTGTTCTAACACACCCACATACTCCTCGTGCGGCTCAAGAAATTGTCAGCAATAAGAATGAAGCTACAGCTCAGACACCAAATACTGATGTAATTCAAGAAACAGCGTGCATAAACACACGGGAAACTTCAGCCAAATGTGATGCCATCGATGAATCAGACTGCAAGAAACACACGTTAAAGGAATCTGAAATTGGACTCTCAAAGGGTGTAGAATCTGTGGTCATACCTGTGGAAGAGGAGGATGTTTGTCCCATCTGTTTGGAAGAATATGATGGGGAGAATCCAAAACTCACGACAAAATGCGAGCATCATTTTCATCTTGCATGCATTCTGGAATGGATGGAAAGAAGTGATATCTGTCCTGTGTGTGATCAGGAAATGGTTTTTAGCCCTCCAATTGATTAG 621 43.32 MGGCCCCSSRGTESNITPGYYYYPRASEEHVPLSSPLSATPAFPTGILVDTNLDTSIPDTYRSPPLPIPYDVVLTHPHTPRAAQEIVSNKNEATAQTPNTDVIQETACINTRETSAKCDAIDESDCKKHTLKESEIGLSKGVESVVIPVEEEDVCPICLEEYDGENPKLTTKCEHHFHLACILEWMERSDICPVCDQEMVFSPPID 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8277306 8280138 + CmaCh02G014380.1 Cma02g01438 289189

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01438 206 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 206 - -
Cma02g01438 206 SMART ring_2 155 195 IPR001841 -
Cma02g01438 206 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 202 IPR013083 -
Cma02g01438 206 Pfam Ring finger domain 154 195 IPR001841 -
Cma02g01438 206 SUPERFAMILY RING/U-box 149 202 - -
Cma02g01438 206 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 206 - -
Cma02g01438 206 ProSiteProfiles Zinc finger RING-type profile. 155 196 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01438 - - - cmos:111435815 382.874
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g01438 Cma16g00602 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01438 Cma-Chr2:8277306 Cma15g00221 Cma-Chr15:1097974 3.25E-29 dispersed
Cma14g02047 Cma-Chr14:14267968 Cma02g01438 Cma-Chr2:8277306 4.54E-46 transposed
Cma15g01239 Cma-Chr15:7852624 Cma02g01438 Cma-Chr2:8277306 8.52E-124 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g1 . . . Bda08g00515 . Bpe07g00104 . Bma14g00608 . Cmo16g00658 Cma02g01438 . Car02g01208 . . . Cpe05g00646 . . . . . . . Cla07g00786 Cam07g0848 Cec07g0901 Cco07g0883 Clacu07g0823 Cmu07g0826 Cre07g1184 . . . . . Csa05g00266 . . . . Bda07g00484 . . Bpe11g00661 . Bma12g00073 . Cmo02g01473 Cmo15g01132 . Cma16g00602 Car06g00910 . . Cpe13g00146 Bhi12g00184 . . . . . . Cla01g00250 Cam01g0255 Cec01g0247 Cco01g0261 Clacu01g0253 Cmu01g0243 Cre09g2266 Lsi09g00241 . Chy07g01225 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004601 2 3 1 2 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g01438 Cma_Chr02 FPKM 16.461111 19.805956 18.685873 20.265884 4.860822 5.840868 5.809437 12.950235 15.603124 15.611265