Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01441 ATGCTCCGATTGGGTTTACCATGCAACAACGCGGGATTGGAAAGGAATAACCTCTTGGGTTTGATCTTTTCTGCTCCGGTGATTACCCATTTCCCAGTCTGCTTCATTTGTTTCATTATGTTTGTTCTTCAACTTCCACCAATCAATGGACAGAAAATGGTGTCTTCAGAAATTAGGGAAGGGGTTAAACAAGTTATTAGGAAGCTGATTTATTCAGTTGCAACAGAAGCTTTGCAAGAAAAATCTGAAGAAATCAAAATGGATGCACCTAAAGAGATATTTTTGAAAGATTACAAGATGCCTGATTACTATTTCGACACGGTGGATTTGAAATTGTTGTTGGGTGAGGAGAAGACAATCGTCAGTTCAAGAATAACAGCCTTCCCTAGAGTTGAAGGATCCAAATTTCCTCTTGTTTTGGATGGGGTTGATATGAAGTTGATTTCGATTAAGGTTAACAGCGAGGACCTCGAGGAGGCAGATTACGTTCTGGACTCCCGCCATTTGACGATCCTATCACCGCCAACTGGTTCTTTTACCTTGGAAATTGTTAATGAGATATATCCTCAGAACAACACTTCTTTAGAGGGACTCTATAAATCAACTGGAAATTTCTCCACACAATGTGAAGCTGAAGGTTTTCGGAAGATCACATTTTACCAGGACCGTCCTGATATAATGGCAAAGTACACATGTCGCATAGAAGCCGATAAGTCATTATACCCGGTGCTACTGTCTAATGGGAATCTTATAGATCAGGGTGATCTAGAGGGTGGAAAACATTTTGCCCTCTGGGAGGATCCCTTTAAGAAACCTTGCTACTTGTTTGCTTTAGTAGCTGGCAAGTTTGTAAGCAGAGATGATGTTTTTATTACTCGTTCAGGTAGGAAAATCTCCTTGAAGATATGGACCCCGGCTGAAGACGTACCCAAGACTGAGCATGCCATGTATTCTTTGAAGGCAGCTATGAAATGGGATGAAGATGTTTTTGGACTAGAATATGATCTCGATCTCTTCAATGTTGTGGCCGTTCCAGATTTCAACATGGGAGCCATGGAAAACAAGAGTTTGAATATTTTCAATTCACAACTTGTCTTGGCATCTCCAGAAACTGCTTCTGATTCCGATTATGCTGCCATATTAGGAGTGATTGGCCATGAGTATTTCCACAACTGGACTGGCAACAGGGTGACATGCCGTGATTGGTTCCAGCTGAGCCTGAAGGAAGGTCTTACGGTGTTCCGTGATCAGGAATTTTCATCCGACATGGGAAGTCGTGCTGTAAAGCGAATTTCTGACGTTTCAAAACTCAGAAACTATCAGTTTCCACAGGATGCTGGTCCCATGGCACATCCTGTTCGACCACATTCCTATATCAAGGTCTATGAAAAGGGTGCTGAAGTCGTGAGGATGTACAAGACCTTATTGGGAAGTCAAGGATTTAGAAAATGCTTATGGATACAACTAAAATACAGGTACTCTCAAGCTGGGACCCCTCGAGTCAAAGTTACATCATCTTACAATTCCGATGGTCGTACTTTTACTCTGAAGTTCAGCCAAGATGTCCCACCAACTCCTGGGCAGCCAAATAAAGTGCCAATGTTTATACCTGTTGCTCTTGGTCTGCTAGACTCAGCCGGCAACGATTTGCCTCTGTCCTCTATATATCATGATGGGGTGTTGCAATCTATAGCTGAAAATGATCGGCCAGTCTACCACACAGTCCTCAGGCTGACCAAGAAAGAAGAAGAGATCGTCTTCTCTGACATACCTGAGCGACCAGTTCCATCTTTGTTTAGGGGCTACAGTGCTCCTATCCGTCTTGAAACAGATCTAAATGACGATGATCTATTTTTCCTTCTTGCCCATGATTCTGATGAGTTCAACCGTTGGGAGGCTGGACAAGTGTTGGCACGGAAACTGATGCTCCTATTGGTGGCCGATCACCAACTAAATAAACCATTGGTTCTTAATTCGAAGTTTGTGGAGGGTCTGAGATCCATACTTTCTGACTCGAGCTTGGATAAAGAATTCATTGCGAAAGCTATAACTCTCCCCGGTGCAGGAGAAATAATGGACATGATGACGGTGGCAGATCCCGATGCTGTTCATGCCGTTCGAACTTTCATCAGGAAGCAACTGGCCAATGCATTGAAAGCAGAGCTTCTCACTGCAGTAGAAAACAACAGGAGTTCAGAAGCATATGTGTTCAACCATCCTGAAATGGCGAGGCGTGCTTTGAAGAACATTTCTCTCGCATATCTTGCATTAGTTGAGGATGCAGAGATTGCCAATCTTGTGCTTGATGAGTATAAGAACGCCTCGAATATGACCGACCAATTTGCAGCTTTGGTGGCTCTAGACCAGAAGCCAGGTGAAACTCGTGACGAGGTTCTCGCCGACTTCTACACCAAGTGGCAGCACGACTATTTGGTTGTCAACAAATGGTTTGCTCTTCAAGCCATGTCAGACATTCCTGGCAATCTTGAGAATGTTCAGAACCTCCTAAATCATCCAGCATTCGACATTCGAAATCCAAACAACGTATATTCTTTGATTGGAGGTTTCTGTGGATCCATCGTCAACTTGCACGCGAAGGACGGATCTGGCTATAAATTCTTGGGAGAAGCTGTCATGCAACTAGATAAAATTAATCCCCAGGTGGCCTCTGGAATGGTCTCTGTCTTCACGAAATGGAAGCGTTACGACGAACACCGACAAAAGCTTGCCAAGGAACAACTGGAGAAGATATTGTCTGTGAATGGACTGTCTGAAAATGTGTTTGAAATTGCATCAAAAAGCTTAGCAGCAGCTTGA 2817 43.49 MLRLGLPCNNAGLERNNLLGLIFSAPVITHFPVCFICFIMFVLQLPPINGQKMVSSEIREGVKQVIRKLIYSVATEALQEKSEEIKMDAPKEIFLKDYKMPDYYFDTVDLKLLLGEEKTIVSSRITAFPRVEGSKFPLVLDGVDMKLISIKVNSEDLEEADYVLDSRHLTILSPPTGSFTLEIVNEIYPQNNTSLEGLYKSTGNFSTQCEAEGFRKITFYQDRPDIMAKYTCRIEADKSLYPVLLSNGNLIDQGDLEGGKHFALWEDPFKKPCYLFALVAGKFVSRDDVFITRSGRKISLKIWTPAEDVPKTEHAMYSLKAAMKWDEDVFGLEYDLDLFNVVAVPDFNMGAMENKSLNIFNSQLVLASPETASDSDYAAILGVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDMGSRAVKRISDVSKLRNYQFPQDAGPMAHPVRPHSYIKVYEKGAEVVRMYKTLLGSQGFRKCLWIQLKYRYSQAGTPRVKVTSSYNSDGRTFTLKFSQDVPPTPGQPNKVPMFIPVALGLLDSAGNDLPLSSIYHDGVLQSIAENDRPVYHTVLRLTKKEEEIVFSDIPERPVPSLFRGYSAPIRLETDLNDDDLFFLLAHDSDEFNRWEAGQVLARKLMLLLVADHQLNKPLVLNSKFVEGLRSILSDSSLDKEFIAKAITLPGAGEIMDMMTVADPDAVHAVRTFIRKQLANALKAELLTAVENNRSSEAYVFNHPEMARRALKNISLAYLALVEDAEIANLVLDEYKNASNMTDQFAALVALDQKPGETRDEVLADFYTKWQHDYLVVNKWFALQAMSDIPGNLENVQNLLNHPAFDIRNPNNVYSLIGGFCGSIVNLHAKDGSGYKFLGEAVMQLDKINPQVASGMVSVFTKWKRYDEHRQKLAKEQLEKILSVNGLSENVFEIASKSLAAA 938
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8293028 8299410 + CmaCh02G014410.1 Cma02g01441 289192

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01441 938 Gene3D - 502 610 IPR038438 -
Cma02g01441 938 Gene3D - 613 936 IPR037144 -
Cma02g01441 938 PRINTS Membrane alanyl dipeptidase (M1) family signature 383 398 IPR001930 GO:0006508
Cma02g01441 938 PRINTS Membrane alanyl dipeptidase (M1) family signature 265 280 IPR001930 GO:0006508
Cma02g01441 938 PRINTS Membrane alanyl dipeptidase (M1) family signature 402 414 IPR001930 GO:0006508
Cma02g01441 938 PRINTS Membrane alanyl dipeptidase (M1) family signature 347 357 IPR001930 GO:0006508
Cma02g01441 938 PANTHER BNAC06G01820D PROTEIN 60 461 - -
Cma02g01441 938 Gene3D Neutral Protease Domain 2 369 501 IPR027268 -
Cma02g01441 938 PANTHER - 492 937 IPR012779 GO:0008270
Cma02g01441 938 PANTHER BNAC06G01820D PROTEIN 460 485 - -
Cma02g01441 938 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 293 499 - -
Cma02g01441 938 Pfam Domain of unknown function (DUF3458) Ig-like fold 497 611 IPR035414 -
Cma02g01441 938 PANTHER - 60 461 IPR012779 GO:0008270
Cma02g01441 938 Pfam Peptidase M1 N-terminal domain 122 275 IPR045357 -
Cma02g01441 938 Pfam Domain of unknown function (DUF3458_C) ARM repeats 614 936 IPR024601 -
Cma02g01441 938 Gene3D tricorn interacting facor f3 domain 100 283 IPR042097 -
Cma02g01441 938 PANTHER - 460 485 IPR012779 GO:0008270
Cma02g01441 938 PANTHER BNAC06G01820D PROTEIN 492 937 - -
Cma02g01441 938 Gene3D - 285 368 - -
Cma02g01441 938 CDD M1_APN 97 483 - -
Cma02g01441 938 Pfam Peptidase family M1 domain 317 490 IPR014782 GO:0008237|GO:0008270
Cma02g01441 938 SUPERFAMILY Leukotriene A4 hydrolase N-terminal domain 92 281 IPR042097 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01441 K01256 pepN; aminopeptidase N [EC:3.4.11.2] - jre:109014484 1443.71
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01441 Cma-Chr2:8293028 Cma14g01256 Cma-Chr14:9957086 2.17E-18 dispersed
Cma15g01236 Cma-Chr15:7832540 Cma02g01441 Cma-Chr2:8293028 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g302 . . . . . . Bma07g01666 . . . Cma02g01441 . Car02g01208 . . . Cpe05g00346 . . . . . . . . . . . . . . Cone8ag0292 Cone12ag0298 . . . Csa05g00269 Chy09g01240 . . . . Bda09g00031 . . . . . Cmo02g01477 Cmo15g01300 . . . . . Cpe13g00149 Bhi12g00279 . . Lac11g2075 Hepe06g1533 . Lcy12g1636 Cla01g00252 Cam01g0258 Cec01g0250 Cco01g0263 Clacu01g0256 Cmu01g0245 Cre09g2264 Lsi09g00243 . . Cme09g01774
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004484 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 2 1 2 1 1 1 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g01441 Cma_Chr02 FPKM 4.098601 6.027347 6.155958 6.184186 5.380625 5.705813 5.895273 10.564694 9.233162 9.104418