Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01449 ATGGCTGAATCCAAACTAAAATTGGAGGTGGTGGAGTGGTTAAATTTTATGCTCCCCCATATAAATTTGCCCCTGGATGCTTCAGATGAGGAATTGAGAACATGCTTGATTGATGGAACTATTCTATGCAGCATGTTAGATAAATTATGCCCTGGGGCAGTTCAGGGAGGCAATTGTAAGCCCATCAATTCTAACATTGAGAGTTTTTTGATAACTCTGGATGAACTAGGACTTCCTGGCTTTGAACCATCTGTCTTAGAGCAGGGACCTATTGCACCAGTTTTGCACTGCCTGAGCACGCTTCGAGCTTCTTTTGATTTGACTGCTGGGGATGATGACACTCAACATTATTCACGAAAGAAATGGAACTTATATGAAGTAGAATCATTAGATGGAATCAATAATTTCTCTGGGCAAAGACTTCAGGATTTTCAGAATGGTTCAATTATATCAGCACTATCGTGTGGTTTAAGAAGTCATATTCAACTTGAGGATCATGAAGTGCAAGAACAAAATCATGATGTTTCTGGTTCTGACATCTTGGAGTTGATAAAATTAAAAAATTTTGAGAATGTCTCTACTCCATCACTTTTCAATTTGGTCAATGGAATTCTGGATGGCAGCGTTGAAACAAAAAATGGAGACGTGTCAAATCAAATAGCATATCTTCTGCGAAAAGTTGTACAGGTGCTTGAGCGGAGAATTTTAACTCATGCTGGAAACCTGAGACATCAAAGCGGTCTTTTGAGAGCTCGGGAGGAGAAATTTCTGTCAAGAATAAAAGTCCTTGAAACCCTTGCAACAGGAACCACTGAAGAAAATGAGGTTGTTTTGAATCAGCTTCAACGTATGAAGGTTGAAAAGTTCAAAGTAGAGGAAATGAAAACTTGCGAGGAGCAGGATAAGATGGCTCTGAAGGAGCAAAAGGAACGCTGTGATGTTGAGCTTTCAAATCTCAGAAAGGAGCTAGAAATGACTAAAAGGGAACATGAAAATAATTGCTTGCAATTGGAAAAAAGTGCCAAGGAGGAAAAAGTTAAGTTTGAAGAGAAACTAAATGAACTCGAATACTTATTAGCGGATTCCAGGAAGAAGGTGAAGGAACTCGAGACATTTTCTGAATCTAAATCACTGAGATGGAAGAAGAAAGAGTTTGTCTATCAAAATGTTGTTAATGATCTGCTTGGAGCTTTTAAGGAATTAAGGGGTTCGCTGGAGTCCATCAAACATGAGGTCTTGAATACAGAAAGAAACTATGCAGAGGATTTTAATTACCTTGGAATAAAGTTCAAAGGATTGGCAGATGTGGCTCTGAATTACAATGCAGTTCTGAACGAAAATAGAATATTGTATAATGAGGTTCAGGATTTAAAAGGTAACATTCGAGTGTATAGTCGAATACGGCCATTCCTTCCAGGGCAAAAAAAGCTAACTACAGTTGAATATATTGGTGAAAATGGTGACTTGGTAATTGTAAATCCTGCTAAACAAGGAAAAGACAATCGTAGGCTATTCAAGTTCAATAAGGTTTTTGGTCCGACATGTTCACAAGAGGAGGTGTTTATAGACACTAGGCCGTTAATTCGGTCTGTCCTTGATGGATATAATGTTTGCATATTTGCTTATGGACAAACTGGTTCGGGAAAGACCTATACTATGAGTGGACCTGATATATCATTGAGAGAAGAATGGGGTGTTAATTATCGAGCATTAAATGACCTCTTCGAAATTTCTCAAAGTAGGAAGGGATCTATTGCCTATGAAATTGGTGTCCAAATGGTTGAGATATACAATGAACAAGTCCGTGATCTGCTCTCAACTAGCGGTCTTCCAAAGAGACTTGGGATTTGGAACTCTACTCAACCAAATGGGCTTGCAGTACCCGATGCTGCCATGCATTCTGTTAGATCTACTGGCGATGTTCTTGATTTGATGAAGATTGGGTTGTCAAACAGGGCTGTTGGAGCCACAGCCCTGAATGAAAGAAGCAGCAGATCTCATAGTGTGCTGACGATTCATGTTCGTGGTGTGGACTTGGAGACAGATGCTATCTTGCGTGGTTGTCTTCATTTAATAGATCTTGCTGGTAGTGAAAGGGTGGACCGCTCCGAGGCGACTGGAGATAGGCTGAAGGAGGCACAACATATTAATAAATCATTGTCAGCTCTTGGGGATGTAATTTTTGCTCTTGCACAGAAGACTGCGCATATTCCTTACAGAAATAGCAAACTAACCCAAGTTCTCCAAAGTTCTTTAGGTGGTCAAGCAAAAACGCTCATGTTCGTACAGATTAATCCTGATGTGGAGTCATATTCTGAAACTATAAGCACCTTGAAGTTTGCAGAAAGAGTTTCTGGTGTCGAGTTGGGTGCTGCCCGCAGCAATAAAGAGGGTAGATATGTTAGAGAACTCATGGATCAGGTGGCAGTTCTCAAGGATACCATTGCAAATAAAGATGAGGAGATTGAGCGGTTGCAGTTACTTAAAACTAGTGGCAATTCTGTGAAGCATGGCGTTGGTTCCCAAAGATTTGAATCATGTTCACCTGGAAGGGCTTTTAGTGCAACTCCTCGGCAGAGGCAAAGGCCATCAAGGAGGAAAGACTTTCTGGTTAATAAAGCAGCATCTGATATGGACAATTTCTCGGATTATGATAGGCGTTCTGAAGCTGGATCATATCAGTCTATGGATGACTTTAGACATCATAAGCATTTTGGATCGGAATCACATCTGTCTGTAGAGGACTTTAGACGTTCTAAGCGTTCTGTATCAGGATCACATCTGCCTCTAGAAGATTTTAGACATCAGAAGGAATCTTTTTCACAGTCGAGGGCTTTAGGTCTGAAGGTTACGGATGATGTTGAGCTTTTAGGCTTTGGGAATGCTGATTCTGATGAGAGATTAAGTGACATATCAGATGGTGGCCTCTCAATGGGGACTGAAACTGATGGATCGATCTGTAGCGTTGTGGAATACACTCTATTCCCTGATGTTTCAAAACCATCAGATAGTTTGATTGCTGTTACCAAACACCCAGATAGCTCGTTGGATGTCAAAAGGCTAGCCGAGAGTGCAACAACTGGGGTGAAGTCATTGGTACCTATTCCAGAAAAAACCAATGCGCCATTGAGGACAGGCCCCAGGCCCCCGCAAAAGCCCGTGCAGACAAAACCTTCAAGAGTTTCACTGACGAAAAGCTCCTCAAAGGCTCCATCAGCATCAAATGCCAAACTTTTCATTGGCACAAAAAAAGCTATTGTTGGTAGCTCCTCGTCGATGAAAAGCGGCAAAAGGTGGAAGTGA 3303 41.11 MAESKLKLEVVEWLNFMLPHINLPLDASDEELRTCLIDGTILCSMLDKLCPGAVQGGNCKPINSNIESFLITLDELGLPGFEPSVLEQGPIAPVLHCLSTLRASFDLTAGDDDTQHYSRKKWNLYEVESLDGINNFSGQRLQDFQNGSIISALSCGLRSHIQLEDHEVQEQNHDVSGSDILELIKLKNFENVSTPSLFNLVNGILDGSVETKNGDVSNQIAYLLRKVVQVLERRILTHAGNLRHQSGLLRAREEKFLSRIKVLETLATGTTEENEVVLNQLQRMKVEKFKVEEMKTCEEQDKMALKEQKERCDVELSNLRKELEMTKREHENNCLQLEKSAKEEKVKFEEKLNELEYLLADSRKKVKELETFSESKSLRWKKKEFVYQNVVNDLLGAFKELRGSLESIKHEVLNTERNYAEDFNYLGIKFKGLADVALNYNAVLNENRILYNEVQDLKGNIRVYSRIRPFLPGQKKLTTVEYIGENGDLVIVNPAKQGKDNRRLFKFNKVFGPTCSQEEVFIDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPDISLREEWGVNYRALNDLFEISQSRKGSIAYEIGVQMVEIYNEQVRDLLSTSGLPKRLGIWNSTQPNGLAVPDAAMHSVRSTGDVLDLMKIGLSNRAVGATALNERSSRSHSVLTIHVRGVDLETDAILRGCLHLIDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKTAHIPYRNSKLTQVLQSSLGGQAKTLMFVQINPDVESYSETISTLKFAERVSGVELGAARSNKEGRYVRELMDQVAVLKDTIANKDEEIERLQLLKTSGNSVKHGVGSQRFESCSPGRAFSATPRQRQRPSRRKDFLVNKAASDMDNFSDYDRRSEAGSYQSMDDFRHHKHFGSESHLSVEDFRRSKRSVSGSHLPLEDFRHQKESFSQSRALGLKVTDDVELLGFGNADSDERLSDISDGGLSMGTETDGSICSVVEYTLFPDVSKPSDSLIAVTKHPDSSLDVKRLAESATTGVKSLVPIPEKTNAPLRTGPRPPQKPVQTKPSRVSLTKSSSKAPSASNAKLFIGTKKAIVGSSSSMKSGKRWK 1100
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8329891 8339200 + CmaCh02G014490.1 Cma02g01449 289200

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01449 1100 Gene3D - 2 106 IPR036872 -
Cma02g01449 1100 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 460 825 IPR027417 -
Cma02g01449 1100 PRINTS Kinesin heavy chain signature 737 758 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma02g01449 1100 PRINTS Kinesin heavy chain signature 688 706 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma02g01449 1100 PRINTS Kinesin heavy chain signature 534 555 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma02g01449 1100 PRINTS Kinesin heavy chain signature 657 674 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma02g01449 1100 ProSiteProfiles Calponin homology (CH) domain profile. 4 106 IPR001715 GO:0005515
Cma02g01449 1100 PANTHER KINESIN-4-LIKE ISOFORM X1 8 1100 - -
Cma02g01449 1100 PANTHER KINESIN-LIKE PROTEIN KLP-3 8 1100 - -
Cma02g01449 1100 MobiDBLite consensus disorder prediction 835 868 - -
Cma02g01449 1100 SMART kinesin_4 458 795 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma02g01449 1100 Gene3D Kinesin motor domain 403 789 IPR036961 -
Cma02g01449 1100 Pfam Calponin homology (CH) domain 7 102 IPR001715 GO:0005515
Cma02g01449 1100 SUPERFAMILY Calponin-homology domain, CH-domain 6 101 IPR036872 -
Cma02g01449 1100 ProSiteProfiles Kinesin motor domain profile. 460 787 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma02g01449 1100 MobiDBLite consensus disorder prediction 835 859 - -
Cma02g01449 1100 MobiDBLite consensus disorder prediction 1029 1075 - -
Cma02g01449 1100 MobiDBLite consensus disorder prediction 1055 1075 - -
Cma02g01449 1100 Pfam Kinesin motor domain 466 785 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma02g01449 1100 Coils Coil 801 828 - -
Cma02g01449 1100 Coils Coil 302 365 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01449 K10406 KIFC2_3; kinesin family member C2/C3 - csv:101218386 1767.28
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g01449 Cma15g01228 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01449 Cma-Chr2:8329891 Cma06g00051 Cma-Chr6:271378 2.77E-48 dispersed
Cma15g01228 Cma-Chr15:7788595 Cma02g01449 Cma-Chr2:8329891 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g320 Blo02g01110 Blo03g00212 Bda06g00112 Bda08g00516 Bpe05g00646 Bpe07g00107 . Bma14g00667 . . Cma02g01449 Cma15g01228 Car02g01216 Car15g01107 . . Cpe05g00339 . . . . . . . Cla10g00365 Cam10g0377 Cec10g0397 Cco10g0390 Clacu10g0383 Cmu10g1218 Cre10g0632 Cone8ag0301 Cone12ag0307 . . . Csa05g00279 Chy09g01230 . . . . . . Bpe11g00603 Bma05g00820 Bma12g00075 . Cmo02g01485 Cmo15g01292 . . . . . Cpe13g00155 Bhi12g00265 . . . . . Lcy12g1649 Cla01g00260 . Cec01g0258 Cco01g0273 . . Cre09g2254 Lsi09g00255 . . Cme09g01765
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002869 5 3 4 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 5 1 2 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g01449 Cma_Chr02 FPKM 4.156746 5.889436 2.413049 2.13063 20.309471 19.810101 22.075153 1.564161 1.237822 1.190668