Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01450 ATGTGTCAAGGAAACTGTGAAAGGTTTGAGAAAATGAACAAACAGAACAATCCTTGTGTAAGCAATAAGCCATCAATATATTACTGGTGGAGACCAGATGAGAGGATATCGTCTGAGCTGGCTGATTTTGTCCTTGAAAATGATACCCCCAACACTTGTTATGCCAAACACGGTAAAGATAGCGGTACTATAAATGAACCAAAGTCTTCTGAGATGTTGAGCACAGCTCAGTTCATTTCAATTTTTGGCCAAGTATTGAATTGTGCTAGTCGTCCTTTTACATTTTTCCAACCGAAGCAGATCTTAAATCAAGAAAATGATGATTCCAATGAGGTTGCGTTCAATAGTGTGGTTGAAGTTAATGGCCAATTAGTTGATATAAGGACCAATGACCAATGTTCTCCTTTGGGCTTGTCTTGTTTGACAGTAACTCAGAAGATATCTTTGTTAGAACCTTGTAAATATCATTCCATGTCATCATTTTGGAGTCTACTACATGGTAGTCGAGACATGCCAGCTAAATCATGGAAAGGAAAAGGCTTCACTAGTATACAAATCTTGCACGATATGAGGAAGAAATATAGATCGATGAACCATATAAGTCATACTGAAGCATCCTACGCTGTGAAAGTTGATAATAATGGAAGCATGAAAGCCAATGCATTCAAGGCTAGAGGTGGTCTTAATGAAGCAGGGGGCTGTACGTCAGGAGATTCAAGTTTTCTTGTTCATGAGTTGATCAATGAAATTTCAAAGAATGCTCCCATGTTCCAATCAATCAATTTATCATCGCTGTTCGTCCGGAAGTTGGAAATAAAGATGATGGAAAATGTTTATATGGCCTCACGTATCCTTACATTAGTTCAAGATAACAGGGCAGATGGAAGTATTTTAGAGATCCCAGATTCAGTTATTTTGGCAGCTCATTCATTACCTTCCAAGGACAGTGTATTAGACAATTTAGACAACAGGTGCAAGGCTAATATCAGTGAAGAACATGAGAATAAAACCAAACAGTCTGACAAGCTCATTCTTGAAAAGGATTACTATAGAGAGGATTGCTCATTGACTCGTGAAAAATCTTGTTACAGTATTGCCAAGCAAGAACATGCCTTTGCGGGGGCATTAGCCGGTGTATTTGTCAGTCTTTGTCTACATCCTGTTGATACAATCAAAACAGTGGTTCAGTCTTATCATGCAGAACAGAAGTCTTTCAGTTACATTGGAAAATCAATTGTCTCTGATCGAGGTTTAAGTGGGCTTTATCGTGGAATCTCCACCAACATTGCGTCTTCAGCTCCGATATCTGCTGTTTACACTTTCACATATGAATCAGTTAAAGGAGCTTTACTTCCACTTCTCCAAGAGGTGTTTTTAGGTGCTTACTCTTGCCCTCTCCCTCTCTTAAGTAGAGATTTGGTGTACGCTGAAGAGGAGTATCGCTCTATTGTCCATTGTACGGCTGGTGGTTGTGCAAGTATTGCTACATCTTTTATTTTTACCCCAAGTGAGCGTATAAAACAGCAGATGCAAGTTAGTTCACGCTACCATAACTGCTGGAATGCTTTTGTTGGTGTTGTTGCAAATGGTGGATTGCGAGGATTATATACTGGATGGGGAGCTGTTCTTTGCAGAAACGTACCACACTCAATTATCAAGTTCTATACCTATGAAAGTTTGAAAGGACTGTTGAAATCTAATGCTCAGCAAACTACTTCACAAACGTTAGTATGTGGAGGGGTAGCTGGATCTACTGCCGCTTTGTTTACCACTCCTTTTGATGTTGTAAAAACGAGATTACAAACACAGATTCCAGGATCTCTGAGCCCATATAAAAGTGTAATCCAAGCGCTCTATGAAATTGGCAAGAAAGAAGGTCTGAAAGGCCTCTATAGGGGGCTGACTCCAAGACTGATAATGTACATGTCTCAAGGTGCAATCTTCTTTTCCTCTTATGAATTTTTGAAGAGAATCTTTTCTCTTGAGGCGCCTCAACATGGGAAGACTCCAACACCAATCCGATGA 2025 39.7 MCQGNCERFEKMNKQNNPCVSNKPSIYYWWRPDERISSELADFVLENDTPNTCYAKHGKDSGTINEPKSSEMLSTAQFISIFGQVLNCASRPFTFFQPKQILNQENDDSNEVAFNSVVEVNGQLVDIRTNDQCSPLGLSCLTVTQKISLLEPCKYHSMSSFWSLLHGSRDMPAKSWKGKGFTSIQILHDMRKKYRSMNHISHTEASYAVKVDNNGSMKANAFKARGGLNEAGGCTSGDSSFLVHELINEISKNAPMFQSINLSSLFVRKLEIKMMENVYMASRILTLVQDNRADGSILEIPDSVILAAHSLPSKDSVLDNLDNRCKANISEEHENKTKQSDKLILEKDYYREDCSLTREKSCYSIAKQEHAFAGALAGVFVSLCLHPVDTIKTVVQSYHAEQKSFSYIGKSIVSDRGLSGLYRGISTNIASSAPISAVYTFTYESVKGALLPLLQEVFLGAYSCPLPLLSRDLVYAEEEYRSIVHCTAGGCASIATSFIFTPSERIKQQMQVSSRYHNCWNAFVGVVANGGLRGLYTGWGAVLCRNVPHSIIKFYTYESLKGLLKSNAQQTTSQTLVCGGVAGSTAALFTTPFDVVKTRLQTQIPGSLSPYKSVIQALYEIGKKEGLKGLYRGLTPRLIMYMSQGAIFFSSYEFLKRIFSLEAPQHGKTPTPIR 674
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8340173 8345437 + CmaCh02G014500.1 Cma02g01450 289201

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01450 674 Gene3D Mitochondrial carrier domain 476 673 IPR023395 -
Cma02g01450 674 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 12 456 - -
Cma02g01450 674 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 475 667 - -
Cma02g01450 674 SUPERFAMILY Mitochondrial carrier 369 655 IPR023395 -
Cma02g01450 674 ProSiteProfiles Solute carrier (Solcar) repeat profile. 365 449 IPR018108 -
Cma02g01450 674 Gene3D Mitochondrial carrier domain 345 464 IPR023395 -
Cma02g01450 674 ProSiteProfiles Solute carrier (Solcar) repeat profile. 570 658 IPR018108 -
Cma02g01450 674 Pfam Mitochondrial carrier protein 571 660 IPR018108 -
Cma02g01450 674 Pfam Mitochondrial carrier protein 369 450 IPR018108 -
Cma02g01450 674 Pfam Mitochondrial carrier protein 482 566 IPR018108 -
Cma02g01450 674 ProSiteProfiles Solute carrier (Solcar) repeat profile. 480 563 IPR018108 -
Cma02g01450 674 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 12 456 - -
Cma02g01450 674 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 475 667 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01450 - - - csv:101216245 1035.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01450 Cma-Chr2:8340173 Cma04g02432 Cma-Chr4:16754469 2.23E-07 dispersed
Cma02g01450 Cma-Chr2:8340173 Cma04g02463 Cma-Chr4:16922337 8.09E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g321 . . . . . . . . . . Cma02g01450 . Car02g01217 . . . Cpe05g00338 . . . . . . . . . . . . . . Cone8ag0303 . . . . Csa05g00280 Chy09g01229 . . . . . Bpe08g01484 . . . . Cmo02g01486 . . . . . . . Bhi12g00262 . . . . . . Cla01g00261 Cam01g0267 Cec01g0259 Cco01g0274 Clacu01g0266 Cmu01g0255 Cre09g2252 Lsi09g00256 . . Cme09g01764
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006178 1 3 1 1 1 0 1 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 4 6 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g01450 Cma_Chr02 FPKM 8.030041 7.371649 6.99987 6.777739 9.766347 8.01172 9.494163 8.159476 7.736956 8.310106