Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01458 ATGAAGTACGTGAGGCCGTTGAATTTGTTTCGCGATTTGTTAAAGGGAAATGCCCTTGAACGTGGCCGTTTTTTGGGTTTAGATGTTGGTGATAAGTATGTTGGTTTGGCCGTCTCTGATCCAGATAATAAAATCGCGTCGCCTCTTAGTGTTTTGTTCAGGAAGAAAACCAATATGCATCTGATGGCTCTGGATTTTCAGAGATTGATCTCTGAACTTTCTCTGTCAGGGTTCATTGTTGGATACCCTTTCGATGGACAACGACGCAACGCCGATGCTGTGCAAGTGAAGATCTTCATCGATGACCTTTGTAAAACTGGAAAACTTGAAGGCGTAAAATATACTTTTTGGGACGAGTGCTTTACATCAAAGAATGTGGAACTTCTGATAAAGCCATTGAAACTGCCTCCTATTTTGTCAAAGACAATAATTGACAAGTTTGCTGCGGTTGGAATACTTCAGGGTTACTTGGATCATTTTAACAGAAGACCAGAATTGGAAGAGAGTAATGACAACAACGAGACCATATAA 531 40.68 MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPELEESNDNNETI 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8377704 8379811 + CmaCh02G014580.1 Cma02g01458 289209

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01458 176 SUPERFAMILY Ribonuclease H-like 22 161 IPR012337 -
Cma02g01458 176 PANTHER POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN 1 166 IPR005227 GO:0006364
Cma02g01458 176 SMART rnase_8s 22 126 IPR006641 GO:0006139
Cma02g01458 176 CDD YqgF 24 158 IPR005227 GO:0006364
Cma02g01458 176 Pfam Holliday junction resolvase 23 158 IPR005227 GO:0006364
Cma02g01458 176 TIGRFAM RNAse_H_YqgF: putative transcription antitermination factor YqgF 25 158 IPR005227 GO:0006364
Cma02g01458 176 Hamap Putative pre-16S rRNA nuclease [yqgF]. 22 161 IPR005227 GO:0006364
Cma02g01458 176 PANTHER POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN 1 166 - -
Cma02g01458 176 Gene3D - 22 167 IPR037027 GO:0006139
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01458 - - - csv:101219574 269.626
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g01222 Cma-Chr15:7733810 Cma02g01458 Cma-Chr2:8377704 6.28E-38 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g328 . . . . . . . . . . Cma02g01458 . Car02g01224 . . . Cpe05g00329 . . . . . . . . . . . . . . Cone8ag0310 . . . . Csa05g00287 Chy09g01219 . . . . . . . . . . Cmo02g01493 . . . . . . . Bhi12g00248 . . . . . . Cla01g00269 Cam01g0278 Cec01g0270 Cco01g0285 Clacu01g0277 Cmu01g0265 Cre09g2244 Lsi09g00264 . . Cme09g01756
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011892 0 3 1 0 1 1 1 1 1 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g01458 Cma_Chr02 FPKM 5.555398 7.64189 8.562022 9.713372 5.699678 6.848076 6.233318 24.801334 24.549831 26.736132