Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01459 ATGGATGGGAGGGACGGCATGGCATTGTCTGGCGGCTCTGCTTCTTACTACATACATAGGGGAGGAGGGGTTGGTGGCTCTGGATCAGGGCTGCCATCGGCTGGATCACATGCCTCCCCTGTATTCCGGCCAATGGCTAACCAGGGTGTTTTGTCCCACTCAAATCTCAGAGGCAACTCGGTTGGACCAACGTATGCTGTTGAGCCATCTCATTCCAATTACCTTCGTGGGATTAGTATGAATGTCTCACCTGGAGTGAACTCTGGTGAACCTGTAAAGAAAAAGAGGGGGAGGCCAAGGAAATATGCTCCGGATGGGCCGGTCTCATTGGGTCTGTCTCCCATGTCTGCTGGTTCTAAGCTCACTCCAGGCTCGAATTCCTCAACCCCGAGACAACGAAGAGGGCGGCCGCCTGGCTCTGGAAGGAAACAGCAATTAGCTCTCCTTGGTGAGTGGATGAACAATTCAGCTGGACTAGCTTTTGCTCCACATGTCATTCACGTTGGAGCTGGAGAAGATATTGTAGATAAAGTATTGTCGTTTGCACAGCAGAGGCCAAGGGCTGTTTGCATCATGTCGGGCAATGGTACCGTTTCTTCTGTTACACTGCGTCAGCCTGCATCTACTGGCGTGAGCGTCACATATGAGGGTCATTTCCACATATTGTGTTTGACTGGTTCTTACTTGGTGGCTGAAGATGGTGGTCCTCGAAATAGGACGGGCGGTATTAGTGTTTCCCTCTCTAGTCCTGATGGTCATGTCATTGGTGGTGGAGTTGCCGTTCTTACAGCGGCTGGCCCTGTTCAGGTAGTTGCTTGTAGCTTTGTTTATGGTGCAAAAATCAAGAATAAGCAGGTCGCTGGTCTGAGAAGCAATGACGGTTCCGAAAATGATCATCATGATAATTTGGTTTCGCCGTCGAGTGCCCCATCTGCTCAAACATACAATCCTTCTGCAATTGGTGTCTGGCCTGGTTCCCGTTCAGTCGATGTGAGAAACCCTCATACTGGAATCGATTTGACACGAGGATGA 1032 50.39 MDGRDGMALSGGSASYYIHRGGGVGGSGSGLPSAGSHASPVFRPMANQGVLSHSNLRGNSVGPTYAVEPSHSNYLRGISMNVSPGVNSGEPVKKKRGRPRKYAPDGPVSLGLSPMSAGSKLTPGSNSSTPRQRRGRPPGSGRKQQLALLGEWMNNSAGLAFAPHVIHVGAGEDIVDKVLSFAQQRPRAVCIMSGNGTVSSVTLRQPASTGVSVTYEGHFHILCLTGSYLVAEDGGPRNRTGGISVSLSSPDGHVIGGGVAVLTAAGPVQVVACSFVYGAKIKNKQVAGLRSNDGSENDHHDNLVSPSSAPSAQTYNPSAIGVWPGSRSVDVRNPHTGIDLTRG 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8380805 8385000 + CmaCh02G014590.1 Cma02g01459 289210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01459 343 MobiDBLite consensus disorder prediction 289 343 - -
Cma02g01459 343 MobiDBLite consensus disorder prediction 115 134 - -
Cma02g01459 343 Pfam Plants and Prokaryotes Conserved (PCC) domain 163 276 IPR005175 -
Cma02g01459 343 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 343 - -
Cma02g01459 343 SUPERFAMILY AF0104/ALDC/Ptd012-like 161 276 - -
Cma02g01459 343 MobiDBLite consensus disorder prediction 301 321 - -
Cma02g01459 343 CDD DUF296 163 275 IPR005175 -
Cma02g01459 343 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 343 IPR039605 GO:0003680
Cma02g01459 343 MobiDBLite consensus disorder prediction 76 143 - -
Cma02g01459 343 Gene3D - 163 290 - -
Cma02g01459 343 ProSiteProfiles PPC domain profile profile. 158 295 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01459 Cma-Chr2:8380805 Cma08g00912 Cma-Chr8:5684400 9.38E-83 dispersed
Cma02g01357 Cma-Chr2:7915629 Cma02g01459 Cma-Chr2:8380805 3.68E-42 transposed
Cma15g01221 Cma-Chr15:7725911 Cma02g01459 Cma-Chr2:8380805 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01459 - - csv:101219973 609.757