Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01460 ATGGCGACCCAACCATCGAACCACCCAGAATCCATTTACGACTTCACTCTGAAGGATGCACAGGGAAATGATGTCAACCTTAGCATATACAAGGGTAAAGTTCTACTCATTGTCAATGTTGCTTCGAAATGTGGGATGACAAATTCGAATTACGTGGAGTTGAACCAACTATACGAGAAATACAAGGAACAAGGTTTGGAAATACTGGTATTTCCATGTAATCAGTTTGGCGATGAGGAACCGGGAAATAACGAGGAGATCAAAGATTTTGTTTGCAGTCGTTTCAAATCAGAATTTCCAATTTTTGACAAGATTGAAGTAAATGGAAACAATTCTGCTCCACTCTACAAGTTCTTGAAATTGGGCAAATGGGGGATATTTGGGGACGATATTCAGTGGAATTTTGCCAAGTTTCTGATCAACAAGGATGGCCAAGTAGTTGATCGTTTTTACCCCACAACATCACCTCTCAGCATTGAGCATGATGTCAAGAAGCTGTTGGGTATCTCATGA 513 40.55 MATQPSNHPESIYDFTLKDAQGNDVNLSIYKGKVLLIVNVASKCGMTNSNYVELNQLYEKYKEQGLEILVFPCNQFGDEEPGNNEEIKDFVCSRFKSEFPIFDKIEVNGNNSAPLYKFLKLGKWGIFGDDIQWNFAKFLINKDGQVVDRFYPTTSPLSIEHDVKKLLGIS 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8384894 8387172 - CmaCh02G014600.1 Cma02g01460 289211

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01460 170 Pfam Glutathione peroxidase 12 120 IPR000889 GO:0004602|GO:0006979
Cma02g01460 170 SUPERFAMILY Thioredoxin-like 11 167 IPR036249 -
Cma02g01460 170 ProSiteProfiles Thioredoxin domain profile. 6 168 IPR013766 -
Cma02g01460 170 PANTHER GLUTATHIONE PEROXIDASE 8-RELATED 1 169 - -
Cma02g01460 170 ProSiteProfiles Glutathione peroxidase profile. 2 170 IPR000889 GO:0004602|GO:0006979
Cma02g01460 170 ProSitePatterns Glutathione peroxidases active site. 32 47 IPR029759 -
Cma02g01460 170 PRINTS Glutathione peroxidase family signature 30 47 IPR000889 GO:0004602|GO:0006979
Cma02g01460 170 PRINTS Glutathione peroxidase family signature 66 82 IPR000889 GO:0004602|GO:0006979
Cma02g01460 170 PRINTS Glutathione peroxidase family signature 131 140 IPR000889 GO:0004602|GO:0006979
Cma02g01460 170 Gene3D Glutaredoxin 1 170 - -
Cma02g01460 170 PANTHER GLUTATHIONE PEROXIDASE 1 169 IPR000889 GO:0004602|GO:0006979
Cma02g01460 170 PIRSF Glutathion_perox 1 169 IPR000889 GO:0004602|GO:0006979
Cma02g01460 170 CDD GSH_Peroxidase 11 163 IPR000889 GO:0004602|GO:0006979
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01460 K00432 gpx, btuE, bsaA; glutathione peroxidase [EC:1.11.1.9] - csv:101220211 328.176
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01460 Cma-Chr2:8384894 Cma06g01662 Cma-Chr6:10278915 4.59E-86 dispersed
Cma02g01460 Cma-Chr2:8384894 Cma02g01461 Cma-Chr2:8387776 2.57E-89 tandem
Cma15g01220 Cma-Chr15:7722285 Cma02g01460 Cma-Chr2:8384894 8.32E-90 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g330 . . . . . . Bma07g01647 . . . Cma02g01460 . . . . . . . . . . . . . . . . . . . . . . Cone6ag0773 Cone9ag0779 . Csa05g00289 Chy09g01217 . . Blo19g00321 . Bda09g00042 . . . Bma12g00393 . Cmo02g01495 . . . . . . . Bhi12g00245 . . . . . . . . . . . . . Lsi09g00266 . . Cme09g01754
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000163 11 8 6 9 6 6 7 6 6 5 4 6 8 5 6 8 6 11 3 6 6 7 6 5 5 6 5 14 6 5 198
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g01460 Cma_Chr02 FPKM 27.677576 25.927443 16.493183 15.456038 12.19001 13.995183 14.411852 16.75947 17.941788 16.334253