Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01462 ATGCTGAAGTTGCCGCGGCGGAAACGCTCGCCGGCGGCAACGAATCAGGAGAACGCGAATAATGTAGCGACAATTGACAATGACGAGACGGCGGCGAGGACGAGAGAGGTAGCGGAAGCGAAGGTGGTGCTTTGTGTTTCCGGCATGACTTGCTCTGCTTGCGCTGTTTCAGTAGAGAATTCCATCAAACATCTTCCAGGCATTCTCGATGTCGCTATCGATTTCTTGAACGATAGGGCTCAAATCCGCTATCTCCCCAATCTCATCGACGAAGATTCAATAGTTAAAGCAATTGAAAATGCTGGATTTCAAGCTACGATATCGAAGGACAGCGCCGATCATCGATCGAGAGAAGTATGTCGAATCCGAGTAAATGGGATGGGCTGCAATTCTTGCTCTTCCATGGTAGAATCAGTTTTGGAAGAAATGTACGGCGTCCAAAAGACTCACATTGCTCTCTTCAAAGGGGAAGCAGAAGTTCACTATGATCCAAAGGTCGTTAACTCCACTCAGTTCATTGTAGCCATACAAGACATTGGCTTTGATGCCTTACTTATAACCATTGGCGAACACGTTAGCAAGATTGAGCTCAAGATCGATGGCATGGATAACGAAAACTCATCGACAAAAGTTAAAGAATCACTCGAATCGGTCGTCGGAATCGAAGATGTCGATATTGACATGGGATTGACCAAAGTTACCATATCTTACAAGCCTGATATAACAGGACCAAGAACTTTCATTGAAGTCATTGAGTCGATCAAATCCGAGCATCTCAAGGCCACGATATATCCCGAAAAAGTGGGACGAGAAAATCGTAAGGAGAAAGAAATTAAACAGCATTATAAGTACTTCTTATGGAGCTCAGCTCTTTCTGTTCCTGTTTTCTTAACATCCATGGTGTTTATGTATATACCTGGAATCAAGCAGATTTTGGATATCAAAGTAGTCAATATGATGAATGTTGGACATCTTATCAAGTGGAATTTGTCCACTCCTGTGCAGTTCATCATAGGTTCAAGATTCTACATTGGATCATACAAAGCTTTGCGCTGTGGTTCTGCCAATATGGATGTATTGATCACTTTGGGAACAAATGCAGCTTATTTCTATTCTGTTTATATAGTTCTAAGATCAGCTACTTCCCCTGCTTTTGATGGGACAGATTTCTTTGAGACTAGCTCAATGCTGATCACTTTCATTCTACTTGGTAAGTATTTGGAGATTCTAGCTAAAGGAAAGACCTCTGAGGCCATTGCTAAGCTTAAGCACTTGGCGCCCGAGACCGCGACGCTCTTGACTCTAGATGGCCATGGAAATGTGATCAGTGAAGTAGAAATCAGCAGTGAGCTGATTCAGAAGAATGATGTTATTAAGATTACGCCTGGTGCGAAAGTAGCTTCCGATGGCATTGTCGTCTGGGGCGAAAGTCATGTCAATGAGAGTATGATTACCGGAGAAGCGAAACCGGTAGCGAAAAGGACAGGCGACAAGGTGATAGGAGGAACTATGAATGAGAATGGAGTGTTGCATATTAAGGCAACGCATGTCGGATCAGAGAGTTCTCTAGCGCAAATCGTTCGACTCGTCGAATCGTCTCAGTTGGCGAAAGCTCCTATTCAGAAACTTGCAGACTATATCTCCAAGTATTTTGTGCCTCTGGTAATTTTGCTTTCTTTTCTCACTTGGATTGCCTGGTTTTTAGCTGGAAAGTTGCATTTGTATCCTAAGTCCTGGTTGCCTTCTTCAATGGACAGTTTTGAACTAGCTCTCCAATTTGGGATTTCTGTTATGGTCATAGCTTGCCCTTGTGCTCTTGGCCTTGCCACCCCGACGGCTGTGATGGTCGGGACCGGTGTCGGTGCATCTCAAGGTGTACTAATCAAAGGTGGCCAAGCTTTAGAATTTGCACATAAGGTCAGCTGCATTGCGTTTGATAAGACAGGAACGCTAACAATAGGAAAGCCAGTGGTTGTAAATGTCAAACTAATGGACACTATAGTACTTGAAGAACTGCTTGAACTCACTGCTGCTACTGAGGTGAACAGTGAGCATCCAATAGCCAAGGCCATTGTTGAATATGCTAAGCAATTCAAGGAAGAACATAACCCCATTTGGCCAGAAGCTCAAGAGTTCATATCCATTCCTGGACATGGAGTGGAAGCCATTGTAAGGAACAAGAAAGTTGTGGTTGGAAACGAGAGCTTGATGATGAACAATGGCATAGAAATTCTTGGGGAAACGGAGAGCTTCCTTGTCGATGCCGAAGGTATGGCGAAAACCACGGTTTTGGTGGCCGTAGATAGAACGGTGTCGGGAGTTATCGTGGTGTCGGATCCATTGAAACCAGGAGCCAAAGAAGTGATCTCCATTCTCAAATCTATGGAAGTCAAGAGCATAATGGTAACAGGTGACAATTGGGGGACTGCAAATTCCATTGCCAAAGAAGTTGGAATAGAAACGGTCATTGCAGAGGCCAAGCCTCAGCAGAAAGCAGAGGAAGTGAAGAATCTTCAGACGGCGGGGCACACAGTGGCAATGGTGGGAGACGGGATCAATGACTCGCCCGCCCTTGTAGCAGCCGATGTCGGGATGGCGATCGGAGCTGGCACGGACATTGCCATTGAGGCAGCAGACATTGTTCTAATGAAAAATGACTTGCAAGATGTTATAACTGCCATTCATCTTTCAAGGAGAACCTTTGCTAGAATTCGCCTCAATTACATTTGGGCTCTTGGTTATAATCTTCTTGCCATTCCGATCGCCGCAGGCGTCTTGTTCCCTTCGACACGGTTTCGGCTACCACCGTGGATCGCCGGAGCTGCCATGGCTGCTTCTTCTGTTAGTGTGGTATGCAGTTCTTTGATGTTGAAGAAGTACAAGAGACCAAAAAAGCTTGATGAAATTGATATTCAAATGAAAGGAATAATAGTTCAATGA 2940 44.73 MLKLPRRKRSPAATNQENANNVATIDNDETAARTREVAEAKVVLCVSGMTCSACAVSVENSIKHLPGILDVAIDFLNDRAQIRYLPNLIDEDSIVKAIENAGFQATISKDSADHRSREVCRIRVNGMGCNSCSSMVESVLEEMYGVQKTHIALFKGEAEVHYDPKVVNSTQFIVAIQDIGFDALLITIGEHVSKIELKIDGMDNENSSTKVKESLESVVGIEDVDIDMGLTKVTISYKPDITGPRTFIEVIESIKSEHLKATIYPEKVGRENRKEKEIKQHYKYFLWSSALSVPVFLTSMVFMYIPGIKQILDIKVVNMMNVGHLIKWNLSTPVQFIIGSRFYIGSYKALRCGSANMDVLITLGTNAAYFYSVYIVLRSATSPAFDGTDFFETSSMLITFILLGKYLEILAKGKTSEAIAKLKHLAPETATLLTLDGHGNVISEVEISSELIQKNDVIKITPGAKVASDGIVVWGESHVNESMITGEAKPVAKRTGDKVIGGTMNENGVLHIKATHVGSESSLAQIVRLVESSQLAKAPIQKLADYISKYFVPLVILLSFLTWIAWFLAGKLHLYPKSWLPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALEFAHKVSCIAFDKTGTLTIGKPVVVNVKLMDTIVLEELLELTAATEVNSEHPIAKAIVEYAKQFKEEHNPIWPEAQEFISIPGHGVEAIVRNKKVVVGNESLMMNNGIEILGETESFLVDAEGMAKTTVLVAVDRTVSGVIVVSDPLKPGAKEVISILKSMEVKSIMVTGDNWGTANSIAKEVGIETVIAEAKPQQKAEEVKNLQTAGHTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKNDLQDVITAIHLSRRTFARIRLNYIWALGYNLLAIPIAAGVLFPSTRFRLPPWIAGAAMAASSVSVVCSSLMLKKYKRPKKLDEIDIQMKGIIVQ 979
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8390166 8394571 - CmaCh02G014620.1 Cma02g01462 289213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01462 979 Gene3D - 727 779 IPR023299 GO:0000166
Cma02g01462 979 Gene3D - 651 726 IPR023299 GO:0000166
Cma02g01462 979 PRINTS Copper-transporting ATPase 1 signature 41 66 - -
Cma02g01462 979 PRINTS Copper-transporting ATPase 1 signature 67 90 - -
Cma02g01462 979 PRINTS Copper-transporting ATPase 1 signature 96 116 - -
Cma02g01462 979 PRINTS Copper-transporting ATPase 1 signature 142 163 - -
Cma02g01462 979 Gene3D - 37 109 - -
Cma02g01462 979 Gene3D - 194 262 - -
Cma02g01462 979 ProSitePatterns Heavy-metal-associated domain. 124 154 IPR017969 GO:0046872
Cma02g01462 979 CDD HMA 122 183 IPR006121 GO:0046872
Cma02g01462 979 ProSiteProfiles Heavy-metal-associated domain profile. 119 185 IPR006121 GO:0046872
Cma02g01462 979 SUPERFAMILY HMA, heavy metal-associated domain 188 255 IPR036163 GO:0046872
Cma02g01462 979 TIGRFAM TIGR00003: copper ion binding protein 122 183 IPR006122 GO:0005507
Cma02g01462 979 CDD HMA 196 253 IPR006121 GO:0046872
Cma02g01462 979 Pfam haloacid dehalogenase-like hydrolase 641 862 - -
Cma02g01462 979 MobiDBLite consensus disorder prediction 1 27 - -
Cma02g01462 979 SUPERFAMILY HMA, heavy metal-associated domain 118 189 IPR036163 GO:0046872
Cma02g01462 979 CDD P-type_ATPase_Cu-like 285 944 - -
Cma02g01462 979 Gene3D - 611 905 IPR023214 -
Cma02g01462 979 Gene3D - 117 187 - -
Cma02g01462 979 SUPERFAMILY Calcium ATPase, transmembrane domain M 392 927 IPR023298 -
Cma02g01462 979 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 357 957 IPR027256 GO:0006812|GO:0016021|GO:0019829
Cma02g01462 979 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 397 930 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma02g01462 979 ProSiteProfiles Heavy-metal-associated domain profile. 41 107 IPR006121 GO:0046872
Cma02g01462 979 Gene3D - 412 534 - -
Cma02g01462 979 PANTHER ATP7, ISOFORM B 32 968 - -
Cma02g01462 979 Pfam Heavy-metal-associated domain 122 182 IPR006121 GO:0046872
Cma02g01462 979 Pfam Heavy-metal-associated domain 46 103 IPR006121 GO:0046872
Cma02g01462 979 Pfam Heavy-metal-associated domain 197 254 IPR006121 GO:0046872
Cma02g01462 979 SUPERFAMILY HMA, heavy metal-associated domain 40 109 IPR036163 GO:0046872
Cma02g01462 979 ProSiteProfiles Heavy-metal-associated domain profile. 194 254 IPR006121 GO:0046872
Cma02g01462 979 SUPERFAMILY Calcium ATPase, transduction domain A 444 530 IPR008250 -
Cma02g01462 979 MobiDBLite consensus disorder prediction 11 27 - -
Cma02g01462 979 ProSitePatterns E1-E2 ATPases phosphorylation site. 646 652 IPR018303 -
Cma02g01462 979 SFLD Haloacid Dehalogenase 626 900 - -
Cma02g01462 979 Pfam E1-E2 ATPase 425 622 - -
Cma02g01462 979 PRINTS P-type cation-transporting ATPase superfamily signature 480 494 - -
Cma02g01462 979 PRINTS P-type cation-transporting ATPase superfamily signature 644 658 - -
Cma02g01462 979 PRINTS P-type cation-transporting ATPase superfamily signature 773 784 - -
Cma02g01462 979 PRINTS P-type cation-transporting ATPase superfamily signature 795 805 - -
Cma02g01462 979 PRINTS P-type cation-transporting ATPase superfamily signature 848 867 - -
Cma02g01462 979 PRINTS P-type cation-transporting ATPase superfamily signature 871 883 - -
Cma02g01462 979 ProSitePatterns Heavy-metal-associated domain. 46 75 IPR017969 GO:0046872
Cma02g01462 979 SUPERFAMILY HAD-like 643 954 IPR036412 -
Cma02g01462 979 SFLD p-type atpase 626 900 IPR044492 -
Cma02g01462 979 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 32 968 - -
Cma02g01462 979 CDD HMA 46 106 IPR006121 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00520 Cma-Chr2:2852337 Cma02g01462 Cma-Chr2:8390166 0 dispersed
Cma02g01462 Cma-Chr2:8390166 Cma07g01142 Cma-Chr7:6242112 0 dispersed
Cma02g01462 Cma-Chr2:8390166 Cma03g00222 Cma-Chr3:3337382 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01462 K17686 - csv:101220448 1657.88