Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01464 ATGGAGAACAGTACCTTGACTGGCTTGTTGAAGAAAGCAGCTTCTGAATTTCCTCACCGCCGGGCTCTCTCAGTCGCCGGAAAGTTAGACCTGACTCATGAGCGGTTGCAGGAGCTCATCGAACATGCCGCCTCTCGCTTGGTGGATGCCGGTGTTAATGCCGGGGATGTGGTGGCGCTCACCTTCCCCAATACTGTTGAGTTTGTGATCACGTTTTTGGCCATAATCCGCTGCCGAGCCACCGCTGCACCATTGAATTCGGCTTACACGGCTGAGGAGTTCGAGTTTTACTTATCGGACTCGGAATCGAAACTACTCCTTACATCGAAGGAAGGAATTCCATCGGCACAAACCGCCGCATCGAAGCTCAATATTCCTCAAGTAAATGTGAATCTGGCGAGCGGCGATGCATTTCTCGATTTCTTTCCGGCCCCAAGCGAATCGAAGGTGAATATGGCGGAAATCGTTAACGATCCGTCCGACGCTGCACTATTCCTTCACACCTCCGGCACCACCAGCCGGCCGAAGGGCGTACCGCTAACTCAACAAAACCTCGCCGCTTCTGTTCAGAACATCAAATCGGTGTACAAACTCTCTGAGTCCGACTCGACCGTACTCGTTCTTCCGTTGTTTCACGTTCACGGACTAATGGCGGGATTGCTATCATCACTGATCTCCGGAGCTGCTGTGACTCTTCCAGCTGCCGGACGCTTCTCTGCTTCAACGTTTTGGTCCGATATGGTCGCCTATAACGCGACGTGGTACACTGCGGTCCCTACGATTCACCAAATCATACTCGACCGCCATTTCAGTAAGCCTGAACCGTCGTATCCAAAGCTCCGGTTTATTCGGAGCTGTAGCGCGTCGCTTGCACCATCGATTTTGGAACGATTGGAAAAATCATTCGGAGCTCCGGTTCTCGAGTCTTACGCGATGACCGAAGCGTCGCATCTAATGGCGTCCAATCCGTTACCGGAGGACGGCGTGCACAAAGCCGGATCGGTAGGGAAGCCGATCGGTCAAGAAATGGCGATTCTGGACGAGAACGGCGTGATACAACCGGAAGGTGTTAAAGGAGAAGTGTGCATTAGAGGACCAAATGTGACGAAGGGATACAAAAACAATCCAGACGCTAACAAGGCCACCTTCTCATTCGGATGGTTCCACACCGGCGATATCGGGTTCTTCGACTCCGACGGATACTTGCATCTCGTCGGCCGGATCAAGGAGCTCATTAACCGTGGAGGTGAGAAGATCTCTCCAATCGAAATAGACGCCGTGCTTCTTTCTCACGCCGACATTGCTCAGGCCGTCGCCTTCGGAGTCACCGACGAAAAATACGGCGAAGAGATCAATTGCGCCATAATTCCGAGGGAGGGAAGCTCGATCGACGAAGCGGAGGTGCTGCGATTTTGCAAGAAAAACCTTGCGTCCTTCAAGATTCCGAAGAAGGTGTTCATCACGGATTTCTTACCGAAAACTGCTTCCGGAAAGATCCAACGCCGATTCGTGGCAGAGCATTTTTCAATCCGTAGTTCAAAGGTTGATAAGGATCAGTTCTTCGGATTGGAGCTTGTTGCAGAATTTCTTTCCCCTGTGCTGATTCTTGCTGGTAAAATGAACGTGGAGAGTCCAAACGAGAAGAAAGAGTATGCTGCTGATCTTTCCTCCATACAGGAGGCCAGGATTAGAATCCAACGTTTCGCCCATCAAACCCCAGTTTTGTCCTCTGAGAGTATTAACGCTGCTTCAGGAAAACAGCTTTTCTTCAAATGTGAATGTTTCCAGAAGGGTGGAGCCTTTAAATTCAGAGGTGCCTGCAATGCTATATATTCACTTGATGATGAACAAGCTGCTAAAGGGGTTGTGACACACAGCAGTGGCAACCATGCTGCAGCTTTGTCTTTGGCTGCAAAACTGCGAGGGATCCCTGCATATATAGTTATACCAGAAAATGCTCCAAAATGTAAAGTTGAAAATGTAATACGTTATGGTGGTCAGGTTATTCGGAGCAAAGCCACAATACAGTCGAGAGAGATGGTCGCCTCGAAGGTTATGCAAGAAACTGGGGCGTTACTTATACATCCATATAATGATGGACGCATAATAAGCGGGCAAGGTACTATCTCGTTGGAGCTTCTAGAACAAGTCCCACAATTGGACACTTTAATCGTCCCCATAAGTGGTGGTGGTTTGATATCTGGAATTTCTGTGGCTGCAAAAGCCATCAATCCTGCCATCCGGATTTTTGCAGCAGAACCTAAGGGAGCTAATGATGCAGCCTTGTCAAAAGCCGCTGGTGAGATAGTAATATTGGCTGAGACCAACACCATAGCCGATGGTCTTCGAGCTTTTCTTGGTGACCTTACCTGGCCGATAGTACGAGATTTGGTGGACGACATAATAACTGTAGAGGACTCAGAGATAGTCGAAGCAATGAGACTTTGTCTTGAAATACTGAAAGTTGTTGTGGAACCTAGTGGAGCAATAGGCCTTGCTGCTGTTCTCTCCGACAGTTTCAAGCAAAACCCTTCATGGAAGGACTGCAACCGCATTGGCATTATACTTTCAGGAGTTTCTTCCTGCAGGCTGCAGCTGTTTTATGTTTACACTGTTGTTTTCTTTGATAGATTGGTTCTGTGA 2643 48.92 MENSTLTGLLKKAASEFPHRRALSVAGKLDLTHERLQELIEHAASRLVDAGVNAGDVVALTFPNTVEFVITFLAIIRCRATAAPLNSAYTAEEFEFYLSDSESKLLLTSKEGIPSAQTAASKLNIPQVNVNLASGDAFLDFFPAPSESKVNMAEIVNDPSDAALFLHTSGTTSRPKGVPLTQQNLAASVQNIKSVYKLSESDSTVLVLPLFHVHGLMAGLLSSLISGAAVTLPAAGRFSASTFWSDMVAYNATWYTAVPTIHQIILDRHFSKPEPSYPKLRFIRSCSASLAPSILERLEKSFGAPVLESYAMTEASHLMASNPLPEDGVHKAGSVGKPIGQEMAILDENGVIQPEGVKGEVCIRGPNVTKGYKNNPDANKATFSFGWFHTGDIGFFDSDGYLHLVGRIKELINRGGEKISPIEIDAVLLSHADIAQAVAFGVTDEKYGEEINCAIIPREGSSIDEAEVLRFCKKNLASFKIPKKVFITDFLPKTASGKIQRRFVAEHFSIRSSKVDKDQFFGLELVAEFLSPVLILAGKMNVESPNEKKEYAADLSSIQEARIRIQRFAHQTPVLSSESINAASGKQLFFKCECFQKGGAFKFRGACNAIYSLDDEQAAKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPENAPKCKVENVIRYGGQVIRSKATIQSREMVASKVMQETGALLIHPYNDGRIISGQGTISLELLEQVPQLDTLIVPISGGGLISGISVAAKAINPAIRIFAAEPKGANDAALSKAAGEIVILAETNTIADGLRAFLGDLTWPIVRDLVDDIITVEDSEIVEAMRLCLEILKVVVEPSGAIGLAAVLSDSFKQNPSWKDCNRIGIILSGVSSCRLQLFYVYTVVFFDRLVL 880
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8398833 8404680 + CmaCh02G014640.1 Cma02g01464 289215

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01464 880 ProSitePatterns Serine/threonine dehydratases pyridoxal-phosphate attachment site. 593 606 IPR000634 GO:0006520|GO:0030170
Cma02g01464 880 CDD FACL_fum10p_like 18 506 IPR045310 GO:0016874
Cma02g01464 880 Gene3D - 564 858 IPR036052 -
Cma02g01464 880 SUPERFAMILY Acetyl-CoA synthetase-like 4 508 - -
Cma02g01464 880 Pfam AMP-binding enzyme 11 414 IPR000873 -
Cma02g01464 880 Pfam AMP-binding enzyme C-terminal domain 423 498 IPR025110 -
Cma02g01464 880 PANTHER OXALATE--COA LIGASE-LIKE 3 515 - -
Cma02g01464 880 Pfam Pyridoxal-phosphate dependent enzyme 568 858 IPR001926 -
Cma02g01464 880 Gene3D - 408 511 IPR045851 -
Cma02g01464 880 Gene3D - 1 407 IPR042099 -
Cma02g01464 880 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 555 841 IPR036052 -
Cma02g01464 880 Gene3D - 601 697 IPR036052 -
Cma02g01464 880 CDD Thr-dehyd 555 858 - -
Cma02g01464 880 ProSitePatterns Putative AMP-binding domain signature. 165 176 IPR020845 -
Cma02g01464 880 PANTHER ACYL-COA SYNTHETASE 3 515 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01464 K22133 AAE3; oxalate---CoA ligase [EC:6.2.1.8] - csv:101220920 910.983
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01464 Cma-Chr2:8398833 Cma15g01097 Cma-Chr15:6987825 0 dispersed
Cma03g01185 Cma-Chr3:7921643 Cma02g01464 Cma-Chr2:8398833 8.86E-18 dispersed
Cma07g00883 Cma-Chr7:4163757 Cma02g01464 Cma-Chr2:8398833 3.76E-35 dispersed
Cma02g01464 Cma-Chr2:8398833 Cma09g00069 Cma-Chr9:298453 3.90E-50 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g336 . . . . . . . Bma14g00071 . . Cma02g01464 . Car02g01229 . . . Cpe05g00325 . . . . . . . . . . . . . . . . . Cone9ag0773 . Csa05g00293 Chy09g01213 . Blo03g00336 . . . . . . . . Cmo02g01499 . . . . . . . Bhi12g00238 . . Lac11g2107 Hepe06g1557 . Lcy12g1663 Cla01g00275 Cam01g0285 Cec01g0278 Cco01g0291 Clacu01g0284 Cmu01g0271 Cre09g2237 Lsi09g00272 . . Cme09g01750
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002220 2 2 3 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 3 3 2 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g01464 Cma_Chr02 FPKM 32.541214 38.843094 143.179733 145.520844 12.487515 11.806075 12.074693 128.25386 125.036041 116.347664