Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01472 ATGACAGCGGTTTCAGCTCCTCCTTCCGACAAACTTGTTCCTCCAAAGGACAAAGATGTTGCGTTGGCTCGTGTCGAATTGGAGAAGAAGTTGGCATTGATCAAAGCATGGGAGGAGAGTGAGAAGATCAAAGCAGAGAACAGGGCATACAAAAGGCTCTCTGCTATTGATTCTTGGGAGAATACCAGAAAAGCTTCAATACAAGCACAGCTGATGAAGTTAGAGGAGAAAATGGAGAAGAAGAAAGCTGAGTATGGCGAGCTAATGAAGAACAAAATCGTTGGAATTCACAAGCAAGGCGAAGAGAAGAAAGCAACCATTGAAGCTGAGCGAAGAGAACAGTGTCTGAAGGTCGAGGAGACTGCAGCAAAATATCGAGCTTCCGGGTTCACCCCGAAGACTCTACTACTCAGATGCTTCAGTGGTTGA 429 45.69 MTAVSAPPSDKLVPPKDKDVALARVELEKKLALIKAWEESEKIKAENRAYKRLSAIDSWENTRKASIQAQLMKLEEKMEKKKAEYGELMKNKIVGIHKQGEEKKATIEAERREQCLKVEETAAKYRASGFTPKTLLLRCFSG 142
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8437165 8438228 + CmaCh02G014720.1 Cma02g01472 289223

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01472 142 PANTHER OS02G0117200 PROTEIN 13 141 - -
Cma02g01472 142 Coils Coil 64 91 - -
Cma02g01472 142 Pfam Remorin, C-terminal region 29 133 IPR005516 -
Cma02g01472 142 PANTHER REMORIN-LIKE 13 141 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01472 - - - cpep:111786683 262.692
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g01472 Cma06g01060 CCT
Cma02g01472 Cma06g01060 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01472 Cma-Chr2:8437165 Cma06g01020 Cma-Chr6:6894684 1.56E-49 dispersed
Cma18g01245 Cma-Chr18:9731835 Cma02g01472 Cma-Chr2:8437165 3.56E-38 wgd
Cma02g01062 Cma-Chr2:6342177 Cma02g01472 Cma-Chr2:8437165 8.12E-39 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g347 . . . . . . . . Cmo06g01081 . Cma02g01472 . Car02g01233 . . . Cpe05g00657 . . . . . . . . . . . . . . . Cone12ag0317 . Cone9ag0765 . . Chy09g01204 . . . . . . Bpe11g00655 . . . Cmo02g01507 . Cma06g01060 . Car06g00892 . Cpe08g00557 . Bhi12g00226 . . . . . . Cla01g00283 Cam01g0293 Cec01g0286 Cco01g0299 Clacu01g0292 Cmu01g0278 Cre09g2229 Lsi09g00282 . . Cme09g01741
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000535 3 7 5 4 4 3 4 3 2 3 3 3 4 3 3 4 3 7 3 3 2 3 3 3 3 3 3 6 4 3 107
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g01472 Cma_Chr02 FPKM 5.512418 5.196276 6.920049 11.775245 31.242901 35.12796 33.499889 22.8134 26.238523 22.868523