Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01482 ATGTCTGCTTCTTCTGTTCCTCTACTTTCCGACCAACCAAATAGTCCGACAACTAATCATTCACTTACAGCTCCTCTGATCTCCGAAAACCCAACAATTTCAACAACAGTAGCAGACAAATATCCATTTCTCTGTCTTGTTCTCTCGGAGTGCAAATCTATAGCCCACGTCGCTCTTCCGATGATTTTTGTCGGATTTTTTATGTACTCTCGTTCTATGATTTCCATGTTGTTCCTCGGCCAGTTGGGTGATTTGTCCTTGGCCGGCGGTTCGCTGGCAATTGGGTTTGCTAATATCACTGGCTACTCTGTTCTGTCTGGATTGGCCAGTGGCATGGAGCCCATCTGCGGCCAAGCTTTTGGGGCTAAAAGATTCAAACTCTTGGGCCTTGCCCTTCAAAGAACAGTCATTCTTCTTCTCCTTTCTTCAATACCCATTTCGTTTTCGTGGCTCAATATGAAGAAAATTCTGATCTTTTGTGGACAAGAGGATGATATTGCCAATGAAGCTCAGTCCTTCATCCTCTGTTCTATCCCTGATTTAATTGCTCTGTCTTTTCTTCACCCTTTACGAATTTACCTTCGTTGTCAATCAATTAACCTCCCTCTCACTTACTGCGTTGCATTGTCAGTTCTTTTACACGTTCCAATTAATTACCTTCTCGTCTCTGTTTTGGATTTGGGAATTCACGGCGTCGCTTTGGGAGCTGTGTGGACGAACTTCAACCTCGTCGGATCCGTGATTATTTTCATCCTCGTCTTCGGCGTGTACAAGAATTCCTGGCCGGGATTCTCGTCGGAGTGTTTGAAGGAGTGGAAGTCGCTTCTTAGGTTAGCAATTCCAAGCTGTATTTCGGTTTGTTTGGAATGGTGGTGGTACGAAATCATGGTTATGCTAAGTGGGTTTATGATGAATCCTCAATCAACAGTGGCTTCCATGGGGATTTTGATTCAAACCACAGCTTTAATCTACATTTTCCCATCGTCACTAAGCGTTGGAGTTTCAACAAGAGTTGGAAAAGAATTGGGAGCAAACCAACCAAACAGAGCCAAATTAGCCGCCATTGTTGGGCTCTGTTTCAGCTTCTTCTTTGGCCTTTCAGCATTGGTGTTCGCTTTCAAAGTTCGAAAAGTGTGGGCCACAATGTTCACAAATGACACAGAAATCATAGAATTGACATCGCTAGTCCTCCCAATCATCGGACTTTGCGAGCTGGGGAACTGCCCACAGACGACAACCTGCGGGGTTTTGAGAGGGACAGCGAGGCCAACATTGGGAGCGAATATAAATTTGGTGTGTTTTTACATGGTGGGAATGCCGATTGCAATATGGTTGAGCTTCTACGGCGGGTGGGACTTCAAAGGACTGTGGATTGGGCTGCTGGCGGCGCAGGCCTCATGTGCTATGGCGATGCTCATGGCGCTGGCTCGGACCAATTGGGAAGAACAGGCCGAGAGGGCTCAGGAGTTGACTAGAACCGGTCCGTTGGAGATTGAAAATGGTGAGGATGTCGAACAAAATGAGACATTTGAGAATGATGACGACAGAAATGGACGTAAGCAAATTGGGTTTGTGTCATTTTGTATAGTGTTCGGGGAGGAGGAGAAAGGTGCATGA 1617 45.89 MSASSVPLLSDQPNSPTTNHSLTAPLISENPTISTTVADKYPFLCLVLSECKSIAHVALPMIFVGFFMYSRSMISMLFLGQLGDLSLAGGSLAIGFANITGYSVLSGLASGMEPICGQAFGAKRFKLLGLALQRTVILLLLSSIPISFSWLNMKKILIFCGQEDDIANEAQSFILCSIPDLIALSFLHPLRIYLRCQSINLPLTYCVALSVLLHVPINYLLVSVLDLGIHGVALGAVWTNFNLVGSVIIFILVFGVYKNSWPGFSSECLKEWKSLLRLAIPSCISVCLEWWWYEIMVMLSGFMMNPQSTVASMGILIQTTALIYIFPSSLSVGVSTRVGKELGANQPNRAKLAAIVGLCFSFFFGLSALVFAFKVRKVWATMFTNDTEIIELTSLVLPIIGLCELGNCPQTTTCGVLRGTARPTLGANINLVCFYMVGMPIAIWLSFYGGWDFKGLWIGLLAAQASCAMAMLMALARTNWEEQAERAQELTRTGPLEIENGEDVEQNETFENDDDRNGRKQIGFVSFCIVFGEEEKGA 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8484877 8488237 - CmaCh02G014820.1 Cma02g01482 289233

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01482 538 TIGRFAM matE: MATE efflux family protein 60 457 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cma02g01482 538 MobiDBLite consensus disorder prediction 490 517 - -
Cma02g01482 538 Pfam MatE 281 443 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cma02g01482 538 Pfam MatE 60 220 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cma02g01482 538 PANTHER MULTIDRUG RESISTANCE PROTEIN 41 498 - -
Cma02g01482 538 PANTHER PROTEIN DETOXIFICATION 49 41 498 - -
Cma02g01482 538 CDD MATE_eukaryotic 50 486 IPR045069 GO:0042910|GO:1990961
Cma02g01482 538 MobiDBLite consensus disorder prediction 1 23 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01482 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - csv:101219094 759.985
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g01482 Cma15g01199 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01482 Cma-Chr2:8484877 Cma12g00226 Cma-Chr12:1117637 0 dispersed
Cma02g01512 Cma-Chr2:8623728 Cma02g01482 Cma-Chr2:8484877 5.11E-95 dispersed
Cma15g01199 Cma-Chr15:7601304 Cma02g01482 Cma-Chr2:8484877 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g400 . . . . . . . . . . Cma02g01482 Cma15g01199 Car02g01242 Car15g01086 . . Cpe05g00307 . . . . . . . . . . . . . . Cone8ag0330 . Cone6ag0749 Cone9ag0752 . Csa05g00322 . . Blo03g00373 . . . . Bpe11g00685 . . . Cmo02g01521 Cmo15g01264 . . . . . Cpe13g00176 Bhi12g00205 . . Lac11g2136 Hepe06g1582 . Lcy12g1700 Cla01g00299 Cam01g0311 Cec01g0302 Cco01g0318 Clacu01g0311 Cmu01g0296 Cre09g2212 Lsi09g00305 . . Cme09g01720
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001123 3 2 4 5 4 2 4 2 2 1 2 2 2 2 2 4 2 7 4 2 2 2 2 1 2 2 2 4 2 2 79
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g01482 Cma_Chr02 FPKM 0.002474 0.0 0.003315 0.0 0.006525 0.0 0.006274 0.077539 0.114886 0.081153