Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01486 ATGGATTTCTTCACCCAATTTTCTGACCCTATTCCTTATTATGGTAATTATAATTACAAGTCGGAATCTTCGTCCACTCTGTCAGACGCCGGAACGCCGCTCCACGTGGTCGCTAACTCCGACGAGGAAGTGATACTGGCGTCGAACCGGCCGAAGCGCCGGGCTGGTAGGCGGGTTTTTAAGGAGACGAGGCATCCAGTGTACAGAGGGGTGCGGCGGAGGAATAAAGGCAAATGGGTGTGTGAGCTAAGGGAGCCGAATAAGAAGACGAGGATTTGGCTCGGGACTTACCTGACTGCTGAGATGGCGGCACGTGCACACGACGTTGCGGCACTCGCGTTGAGAGGAAAATCGGCTTGTCTCAATTTTGCTGACTCAGCTTGGCGGTTTCCGATTCCATCGAGTAATGATCCGTCGGTGATCAGAGAAGCGGCGGCGAAGGCGGCGAAAGAATGTGAGTATGAAGAGTGCAATGTGAGTCGGGAAGAGGACGAGGTAGTTTTGAGTCAGCCAAAGGCGGAGCCTGATCAACGGGATTACGTCGACGACGAGGCTTTGTTGAATATGCCGATGTTGCTTGCCAGCATGGCGGAAGGGCCTCTGCTTTCTCCTCCTCATTTTTGCGTACGCGATGACGTGGAGTGGGATGACGTGGATACAAATGATGATGTGTCATTGTGGAGCTTTTAG 690 52.75 MDFFTQFSDPIPYYGNYNYKSESSSTLSDAGTPLHVVANSDEEVILASNRPKRRAGRRVFKETRHPVYRGVRRRNKGKWVCELREPNKKTRIWLGTYLTAEMAARAHDVAALALRGKSACLNFADSAWRFPIPSSNDPSVIREAAAKAAKECEYEECNVSREEDEVVLSQPKAEPDQRDYVDDEALLNMPMLLASMAEGPLLSPPHFCVRDDVEWDDVDTNDDVSLWSF 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8494391 8495080 + CmaCh02G014860.1 Cma02g01486 289237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01486 229 SUPERFAMILY DNA-binding domain 67 126 IPR016177 GO:0003677
Cma02g01486 229 Pfam AP2 domain 66 116 IPR001471 GO:0003700|GO:0006355
Cma02g01486 229 CDD AP2 68 126 IPR001471 GO:0003700|GO:0006355
Cma02g01486 229 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700|GO:0006355
Cma02g01486 229 PRINTS Ethylene responsive element binding protein signature 90 106 IPR001471 GO:0003700|GO:0006355
Cma02g01486 229 ProSiteProfiles AP2/ERF domain profile. 67 124 IPR001471 GO:0003700|GO:0006355
Cma02g01486 229 SMART rav1_2 67 130 IPR001471 GO:0003700|GO:0006355
Cma02g01486 229 Gene3D AP2/ERF domain 67 125 IPR036955 GO:0003700|GO:0006355
Cma02g01486 229 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1F 1 229 - -
Cma02g01486 229 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 229 IPR045277 GO:0003700
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01486 Cma15g01197 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01486 Cma-Chr2:8494391 Cma16g00151 Cma-Chr16:665860 5.34E-67 dispersed
Cma02g01485 Cma-Chr2:8491930 Cma02g01486 Cma-Chr2:8494391 4.56E-37 tandem
Cma15g01197 Cma-Chr15:7581626 Cma02g01486 Cma-Chr2:8494391 1.22E-88 wgd
Cma02g01047 Cma-Chr2:6235241 Cma02g01486 Cma-Chr2:8494391 5.76E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34531 PF00847 AP2 2.90E-14 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01486 - - bhj:120092445 367.466