Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma02g01486 | ATGGATTTCTTCACCCAATTTTCTGACCCTATTCCTTATTATGGTAATTATAATTACAAGTCGGAATCTTCGTCCACTCTGTCAGACGCCGGAACGCCGCTCCACGTGGTCGCTAACTCCGACGAGGAAGTGATACTGGCGTCGAACCGGCCGAAGCGCCGGGCTGGTAGGCGGGTTTTTAAGGAGACGAGGCATCCAGTGTACAGAGGGGTGCGGCGGAGGAATAAAGGCAAATGGGTGTGTGAGCTAAGGGAGCCGAATAAGAAGACGAGGATTTGGCTCGGGACTTACCTGACTGCTGAGATGGCGGCACGTGCACACGACGTTGCGGCACTCGCGTTGAGAGGAAAATCGGCTTGTCTCAATTTTGCTGACTCAGCTTGGCGGTTTCCGATTCCATCGAGTAATGATCCGTCGGTGATCAGAGAAGCGGCGGCGAAGGCGGCGAAAGAATGTGAGTATGAAGAGTGCAATGTGAGTCGGGAAGAGGACGAGGTAGTTTTGAGTCAGCCAAAGGCGGAGCCTGATCAACGGGATTACGTCGACGACGAGGCTTTGTTGAATATGCCGATGTTGCTTGCCAGCATGGCGGAAGGGCCTCTGCTTTCTCCTCCTCATTTTTGCGTACGCGATGACGTGGAGTGGGATGACGTGGATACAAATGATGATGTGTCATTGTGGAGCTTTTAG | 690 | 52.75 | MDFFTQFSDPIPYYGNYNYKSESSSTLSDAGTPLHVVANSDEEVILASNRPKRRAGRRVFKETRHPVYRGVRRRNKGKWVCELREPNKKTRIWLGTYLTAEMAARAHDVAALALRGKSACLNFADSAWRFPIPSSNDPSVIREAAAKAAKECEYEECNVSREEDEVVLSQPKAEPDQRDYVDDEALLNMPMLLASMAEGPLLSPPHFCVRDDVEWDDVDTNDDVSLWSF | 229 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 8494391 | 8495080 | + | CmaCh02G014860.1 | Cma02g01486 | 289237 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma02g01486 | 229 | SUPERFAMILY | DNA-binding domain | 67 | 126 | IPR016177 | GO:0003677 | |
Cma02g01486 | 229 | Pfam | AP2 domain | 66 | 116 | IPR001471 | GO:0003700|GO:0006355 | |
Cma02g01486 | 229 | CDD | AP2 | 68 | 126 | IPR001471 | GO:0003700|GO:0006355 | |
Cma02g01486 | 229 | PRINTS | Ethylene responsive element binding protein signature | 68 | 79 | IPR001471 | GO:0003700|GO:0006355 | |
Cma02g01486 | 229 | PRINTS | Ethylene responsive element binding protein signature | 90 | 106 | IPR001471 | GO:0003700|GO:0006355 | |
Cma02g01486 | 229 | ProSiteProfiles | AP2/ERF domain profile. | 67 | 124 | IPR001471 | GO:0003700|GO:0006355 | |
Cma02g01486 | 229 | SMART | rav1_2 | 67 | 130 | IPR001471 | GO:0003700|GO:0006355 | |
Cma02g01486 | 229 | Gene3D | AP2/ERF domain | 67 | 125 | IPR036955 | GO:0003700|GO:0006355 | |
Cma02g01486 | 229 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1F | 1 | 229 | - | - | |
Cma02g01486 | 229 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D | 1 | 229 | IPR045277 | GO:0003700 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma02g01486 | Cma15g01197 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g01486 | Cma-Chr2:8494391 | Cma16g00151 | Cma-Chr16:665860 | 5.34E-67 | dispersed | |
Cma02g01485 | Cma-Chr2:8491930 | Cma02g01486 | Cma-Chr2:8494391 | 4.56E-37 | tandem | |
Cma15g01197 | Cma-Chr15:7581626 | Cma02g01486 | Cma-Chr2:8494391 | 1.22E-88 | wgd | |
Cma02g01047 | Cma-Chr2:6235241 | Cma02g01486 | Cma-Chr2:8494391 | 5.76E-60 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34531 | PF00847 | AP2 | 2.90E-14 | CL0081 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma02g01486 | - | - | bhj:120092445 | 367.466 |