Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01490 ATGCAATCTCCTTGTATTAGAGAGGCCTCGAAGGCCTGCCTTCGAGGCTGCTGTCGACCTCTGTTTCTTGGTCTTCCTGATTCTTCCCTGCCATTAGCTTCAACTCCTGCATACGACTTTCATGGAGCGACACAAACGTCTCTTCACCCAAATGCTCGCTTCTCCGACCACGAATCAATTCCTTCACTAAACGATGCGTTTACTTACTTCATTAGAGCATACCCTCTGTACCCGGACACACAACAGATCGATCAAATCCGAGCTGATGAATACAATCATCTTGCCCTCTCCAAACATGTCTGTCTAGATTACAATGGCCAGTGTCTCTTTTCCTATGCTCAACAGCAAAGTTTCCCAATGGCTACAGCTGCTGCATATTCTTCTTCTCCATCAGGTTCCCCTCCTCCGTTTCTGCATTCCCCGGGATCGCCTTTCTTCAACATCTCCCATAGATCAGTGAAACCAAATACCCAGGTGGGGAATTGTGGTCAAGAATCAGAATTTGAGTCCAGAATCAGAAGTAGAATCATGAGGTTTATGAATTTATCAGAAGATGATTACGCTATGGTATTCACAGCCAATCAATCATCAGCCTTCAAACTTCTGGCTGACACTTACCCTTTTCAGTACAATAGAAATTTGGTCACAGTTTATGATCACAAGAGCGAGGCAGTTGAATTGATGGTAGAAAGCTCTAAGAAGAAAGGAGCTAGAATCAGCTCAGCTGAGTTCTTATGGCCAAATCTAACCCTCGCCACCGGAAAATTAAGAAGACTAATCGTGAGTAAACGAAAGAAGAAGAGGAAGTCGAAAAGGGGAATATTTGTTTTTCCACTTCAGTCAAGATTAACAGGAACTCCATATTCATATCAATGGCTGAACATAGCTCGGGAAAATGACTGGGATGTCTGCCTAGATACATGCGCACTCGGAGCAAAAGACATGGAAACTTTAGGCCTCTCTCTGTTCAAGCCCGAATTTCTAATTTCTTCTTTCTACAAAATTTTCGGCGAAAACCCATCAGGATTTGGCTGTTTGTTCATCAAGAAATCCAATGTTTCATTCATAGAGAGTTTAATTACTTCACCTTCAAGTATCGGCGTTATAAGCCTTATCTCAACATCACCACAATTTCCATTTCCAGAAGAACCAGAGAGTACAGAGATCAAAACTGAACAAATCTCAAAACCCGGCCTACAAAATCAAAATCTCGCTATACCAGAGTCGTCAAATTTACCTAAAATCGGAGAGGACGCTGAAATTGAAGAGGAAGAACTCTCAATTACAGGAATCGTCGAAATAGGGACGCCCCTCGAATCGGCTCGATCAACAAACACAGAAATGGAAATAAACTGCAGAGGGTTGGACCACGCAGATTCAGTAGGCCTAAGATTAATAAGCATTAGGGGAAGGTACCTGATCAATTGGCTCACAAATGCATTGACGAACCTCCAACACCCAAATGCGGAAGAAGGGTTTAGGCAAGGGCTAGTGAGAATCTACGGCCCGAAAATCCAAATCAACCGAGGACCGGCCGTCGCATTCAACGTATTCGATTGGAAAGGGGAAAAGGTGGATCCAGGTATGGTTCAGAAACTAGCCGACAGGAACAACATATCGTTGAGCAATGGATTTCTGAAGCAGATAAGTTTCTCGGAGAAGAACGAGGAGGAGTTTGAAATGAGAAAAGAGAGAGTGGTGGAAGAGGGTGAAAGAACGGATAGAAGCGAGAAACGACATTGTTGGATCTCAGTGGTGTCGGCGGGCGTTGGATTTTTGACGAATTTTGAAGATGTTTACAGGGTTTGGGCGTTTGTTTCCAGGTTTCTGGATGCAGATTTTGTGGAGAAGGAGAGATGGAGATATATGGCTCTTAATCAAAACACAATTGAAGTTTGA 1899 43.5 MQSPCIREASKACLRGCCRPLFLGLPDSSLPLASTPAYDFHGATQTSLHPNARFSDHESIPSLNDAFTYFIRAYPLYPDTQQIDQIRADEYNHLALSKHVCLDYNGQCLFSYAQQQSFPMATAAAYSSSPSGSPPPFLHSPGSPFFNISHRSVKPNTQVGNCGQESEFESRIRSRIMRFMNLSEDDYAMVFTANQSSAFKLLADTYPFQYNRNLVTVYDHKSEAVELMVESSKKKGARISSAEFLWPNLTLATGKLRRLIVSKRKKKRKSKRGIFVFPLQSRLTGTPYSYQWLNIARENDWDVCLDTCALGAKDMETLGLSLFKPEFLISSFYKIFGENPSGFGCLFIKKSNVSFIESLITSPSSIGVISLISTSPQFPFPEEPESTEIKTEQISKPGLQNQNLAIPESSNLPKIGEDAEIEEEELSITGIVEIGTPLESARSTNTEMEINCRGLDHADSVGLRLISIRGRYLINWLTNALTNLQHPNAEEGFRQGLVRIYGPKIQINRGPAVAFNVFDWKGEKVDPGMVQKLADRNNISLSNGFLKQISFSEKNEEEFEMRKERVVEEGERTDRSEKRHCWISVVSAGVGFLTNFEDVYRVWAFVSRFLDADFVEKERWRYMALNQNTIEV 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8518632 8520530 + CmaCh02G014900.1 Cma02g01490 289241

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01490 632 PANTHER MOLYBDOPTERIN COFACTOR SULFURASE MOSC 3 632 - -
Cma02g01490 632 Gene3D - 152 396 IPR015421 GO:0003824
Cma02g01490 632 SUPERFAMILY PLP-dependent transferases 170 365 IPR015424 -
Cma02g01490 632 Gene3D Aspartate Aminotransferase, domain 1 444 618 IPR015422 GO:0003824
Cma02g01490 632 PANTHER MOLYBDENUM COFACTOR SULFURASE-LIKE PROTEIN 3 632 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01490 - - - csv:101220052 977.622
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01490 Cma-Chr2:8518632 Cma07g00730 Cma-Chr7:3225429 9.11E-34 dispersed
Cma02g01026 Cma-Chr2:6098233 Cma02g01490 Cma-Chr2:8518632 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g414 . . . . . . . . . . Cma02g01490 . Car02g01248 . . . Cpe05g00301 . . . . . . . . . . . . . . . . . Cone15ag0129 . Csa05g00332 Chy09g01177 . . . . . . . . . . Cmo02g01529 . . . . . . . Bhi12g00186 . . Lac11g2149 Hepe06g1593 . Lcy12g1710 Cla01g00309 Cam01g0321 Cec01g0312 Cco01g0329 Clacu01g0322 Cmu01g0307 . Lsi09g00317 . . Cme09g01710
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013740 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 0 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g01490 Cma_Chr02 FPKM 0.613481 0.861023 23.471306 23.814596 13.79696 12.268328 14.492744 44.390419 41.460049 42.917461