Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cma02g01492	ATGCAAGAACCTGGGTTGGGAGTGATGACTGCTGCTGCTGCTGCCGCCGCCTCTACTGCTGCCTTAAGCGGTGACGTTTCCATCTCCGGCGACAACGCCCAACTCAAGGCCGAGATTGCTACTCATCCGCTTTATGAGCAGCTTTTAGCCGCACATGTTGCTTGTCTTCGTGTTGCTACTCCGATTGACCAGCTTCCAATCATCGACGCTCAGTTGGCTCAATCGCACCACGTTTTGCGATCTTATGCCTCTCAGCAGCATCACCAACATGCCCATTCCTTATCGCCTCACGACCGCCAAGAACTCGACAATTTCCTAGCGCAGTATATGATCGTTTTGTGTTCTTTTAAAGACCAGCTTCAGCAACATGTGAGGGTTCACGCAGTGGAAGCTGTTATGGCATGCCGTGAAATTGAAAATACTCTACAAGCTCTTACAGGAGTGAGCCTTGGTGAAGGAAGCGGTGCAACGATGTCAGACGACGACGACGACGACGTTCCCATCGAGTTTTCGCTTGATCAATCTGGTGGTGATGCACATGACATGATGGGGTTTGGACCGCTGCTTCCAACCGAATCGGAAAGGTCGTTGATGGAGAGGGTTCGACAAGAATTGAAGATTGAGCTAAAACAGGGATTCAAGTCAAGAATTGAGGATGTGAGAGAGGAGATACTGAGAAAAAGAAGGGCAGGGAAGTTGCCTGGTGATACAACCACAGTATTGAAGAACTGGTGGCAGCAGCATTCCAAGTGGCCATACCCAACGGAGGACGACAAGGCGAAGCTGGTGGAGGAGACGGGGTTGCAGCTGAAACAAATAAACAATTGGTTCATCAACCAAAGGAAGAGAAACTGGCACAGCAACTCTCAATCAGTAACATCCTTGAAGTCAAAGCGCAAGAGATAA	906	49.56	MQEPGLGVMTAAAAAAASTAALSGDVSISGDNAQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPIIDAQLAQSHHVLRSYASQQHHQHAHSLSPHDRQELDNFLAQYMIVLCSFKDQLQQHVRVHAVEAVMACREIENTLQALTGVSLGEGSGATMSDDDDDDVPIEFSLDQSGGDAHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR	301

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
2	8524124	8527441	-	CmaCh02G014920.1	Cma02g01492	289243

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cma02g01492	301	Gene3D	-	223	297	-	-
	Cma02g01492	301	SMART	HOX_1	226	291	IPR001356	GO:0003677
	Cma02g01492	301	SMART	KNOX1_2	33	77	IPR005540	GO:0003677\|GO:0005634
	Cma02g01492	301	Pfam	KNOX2 domain	95	146	IPR005541	GO:0003677\|GO:0005634
	Cma02g01492	301	SUPERFAMILY	Homeodomain-like	226	291	IPR009057	-
	Cma02g01492	301	SMART	KNOX2_2	92	147	IPR005541	GO:0003677\|GO:0005634
	Cma02g01492	301	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	2	301	-	-
	Cma02g01492	301	CDD	homeodomain	227	288	IPR001356	GO:0003677
	Cma02g01492	301	Pfam	KNOX1 domain	35	76	IPR005540	GO:0003677\|GO:0005634
	Cma02g01492	301	ProSiteProfiles	ELK domain profile.	204	224	IPR005539	GO:0003677
	Cma02g01492	301	ProSiteProfiles	'Homeobox' domain profile.	224	287	IPR001356	GO:0003677
	Cma02g01492	301	PANTHER	HOMEOBOX PROTEIN KNOTTED-1-LIKE 7	2	301	-	-
	Cma02g01492	301	Pfam	Homeobox KN domain	244	283	IPR008422	GO:0003677\|GO:0006355

Event-related genes

Select	Gene_1	Gene_2	Event_name
	Cma02g01492	Cma15g01189	CST

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Cma02g01492	Cma-Chr2:8524124	Cma09g00430	Cma-Chr9:1876271	1.99E-133	dispersed
	Cma15g01189	Cma-Chr15:7530904	Cma02g01492	Cma-Chr2:8524124	1.93E-150	wgd

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	34532	PF03791	KNOX2	1.20E-17	No_clan	Cma	TF

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cma02g01492	-		-	cmos:111459669	568.926