Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01492 ATGCAAGAACCTGGGTTGGGAGTGATGACTGCTGCTGCTGCTGCCGCCGCCTCTACTGCTGCCTTAAGCGGTGACGTTTCCATCTCCGGCGACAACGCCCAACTCAAGGCCGAGATTGCTACTCATCCGCTTTATGAGCAGCTTTTAGCCGCACATGTTGCTTGTCTTCGTGTTGCTACTCCGATTGACCAGCTTCCAATCATCGACGCTCAGTTGGCTCAATCGCACCACGTTTTGCGATCTTATGCCTCTCAGCAGCATCACCAACATGCCCATTCCTTATCGCCTCACGACCGCCAAGAACTCGACAATTTCCTAGCGCAGTATATGATCGTTTTGTGTTCTTTTAAAGACCAGCTTCAGCAACATGTGAGGGTTCACGCAGTGGAAGCTGTTATGGCATGCCGTGAAATTGAAAATACTCTACAAGCTCTTACAGGAGTGAGCCTTGGTGAAGGAAGCGGTGCAACGATGTCAGACGACGACGACGACGACGTTCCCATCGAGTTTTCGCTTGATCAATCTGGTGGTGATGCACATGACATGATGGGGTTTGGACCGCTGCTTCCAACCGAATCGGAAAGGTCGTTGATGGAGAGGGTTCGACAAGAATTGAAGATTGAGCTAAAACAGGGATTCAAGTCAAGAATTGAGGATGTGAGAGAGGAGATACTGAGAAAAAGAAGGGCAGGGAAGTTGCCTGGTGATACAACCACAGTATTGAAGAACTGGTGGCAGCAGCATTCCAAGTGGCCATACCCAACGGAGGACGACAAGGCGAAGCTGGTGGAGGAGACGGGGTTGCAGCTGAAACAAATAAACAATTGGTTCATCAACCAAAGGAAGAGAAACTGGCACAGCAACTCTCAATCAGTAACATCCTTGAAGTCAAAGCGCAAGAGATAA 906 49.56 MQEPGLGVMTAAAAAAASTAALSGDVSISGDNAQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPIIDAQLAQSHHVLRSYASQQHHQHAHSLSPHDRQELDNFLAQYMIVLCSFKDQLQQHVRVHAVEAVMACREIENTLQALTGVSLGEGSGATMSDDDDDDVPIEFSLDQSGGDAHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 301
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 8524124 8527441 - CmaCh02G014920.1 Cma02g01492 289243
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01492 301 Gene3D - 223 297 - -
Cma02g01492 301 SMART HOX_1 226 291 IPR001356 GO:0003677
Cma02g01492 301 SMART KNOX1_2 33 77 IPR005540 GO:0003677|GO:0005634
Cma02g01492 301 Pfam KNOX2 domain 95 146 IPR005541 GO:0003677|GO:0005634
Cma02g01492 301 SUPERFAMILY Homeodomain-like 226 291 IPR009057 -
Cma02g01492 301 SMART KNOX2_2 92 147 IPR005541 GO:0003677|GO:0005634
Cma02g01492 301 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 301 - -
Cma02g01492 301 CDD homeodomain 227 288 IPR001356 GO:0003677
Cma02g01492 301 Pfam KNOX1 domain 35 76 IPR005540 GO:0003677|GO:0005634
Cma02g01492 301 ProSiteProfiles ELK domain profile. 204 224 IPR005539 GO:0003677
Cma02g01492 301 ProSiteProfiles 'Homeobox' domain profile. 224 287 IPR001356 GO:0003677
Cma02g01492 301 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 2 301 - -
Cma02g01492 301 Pfam Homeobox KN domain 244 283 IPR008422 GO:0003677|GO:0006355
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cma02g01492 Cma15g01189 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01492 Cma-Chr2:8524124 Cma09g00430 Cma-Chr9:1876271 1.99E-133 dispersed
Cma15g01189 Cma-Chr15:7530904 Cma02g01492 Cma-Chr2:8524124 1.93E-150 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34532 PF03791 KNOX2 1.20E-17 No_clan Cma TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01492 - - cmos:111459669 568.926