Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma02g01492 | ATGCAAGAACCTGGGTTGGGAGTGATGACTGCTGCTGCTGCTGCCGCCGCCTCTACTGCTGCCTTAAGCGGTGACGTTTCCATCTCCGGCGACAACGCCCAACTCAAGGCCGAGATTGCTACTCATCCGCTTTATGAGCAGCTTTTAGCCGCACATGTTGCTTGTCTTCGTGTTGCTACTCCGATTGACCAGCTTCCAATCATCGACGCTCAGTTGGCTCAATCGCACCACGTTTTGCGATCTTATGCCTCTCAGCAGCATCACCAACATGCCCATTCCTTATCGCCTCACGACCGCCAAGAACTCGACAATTTCCTAGCGCAGTATATGATCGTTTTGTGTTCTTTTAAAGACCAGCTTCAGCAACATGTGAGGGTTCACGCAGTGGAAGCTGTTATGGCATGCCGTGAAATTGAAAATACTCTACAAGCTCTTACAGGAGTGAGCCTTGGTGAAGGAAGCGGTGCAACGATGTCAGACGACGACGACGACGACGTTCCCATCGAGTTTTCGCTTGATCAATCTGGTGGTGATGCACATGACATGATGGGGTTTGGACCGCTGCTTCCAACCGAATCGGAAAGGTCGTTGATGGAGAGGGTTCGACAAGAATTGAAGATTGAGCTAAAACAGGGATTCAAGTCAAGAATTGAGGATGTGAGAGAGGAGATACTGAGAAAAAGAAGGGCAGGGAAGTTGCCTGGTGATACAACCACAGTATTGAAGAACTGGTGGCAGCAGCATTCCAAGTGGCCATACCCAACGGAGGACGACAAGGCGAAGCTGGTGGAGGAGACGGGGTTGCAGCTGAAACAAATAAACAATTGGTTCATCAACCAAAGGAAGAGAAACTGGCACAGCAACTCTCAATCAGTAACATCCTTGAAGTCAAAGCGCAAGAGATAA | 906 | 49.56 | MQEPGLGVMTAAAAAAASTAALSGDVSISGDNAQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPIIDAQLAQSHHVLRSYASQQHHQHAHSLSPHDRQELDNFLAQYMIVLCSFKDQLQQHVRVHAVEAVMACREIENTLQALTGVSLGEGSGATMSDDDDDDVPIEFSLDQSGGDAHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR | 301 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 8524124 | 8527441 | - | CmaCh02G014920.1 | Cma02g01492 | 289243 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma02g01492 | 301 | Gene3D | - | 223 | 297 | - | - | |
Cma02g01492 | 301 | SMART | HOX_1 | 226 | 291 | IPR001356 | GO:0003677 | |
Cma02g01492 | 301 | SMART | KNOX1_2 | 33 | 77 | IPR005540 | GO:0003677|GO:0005634 | |
Cma02g01492 | 301 | Pfam | KNOX2 domain | 95 | 146 | IPR005541 | GO:0003677|GO:0005634 | |
Cma02g01492 | 301 | SUPERFAMILY | Homeodomain-like | 226 | 291 | IPR009057 | - | |
Cma02g01492 | 301 | SMART | KNOX2_2 | 92 | 147 | IPR005541 | GO:0003677|GO:0005634 | |
Cma02g01492 | 301 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 2 | 301 | - | - | |
Cma02g01492 | 301 | CDD | homeodomain | 227 | 288 | IPR001356 | GO:0003677 | |
Cma02g01492 | 301 | Pfam | KNOX1 domain | 35 | 76 | IPR005540 | GO:0003677|GO:0005634 | |
Cma02g01492 | 301 | ProSiteProfiles | ELK domain profile. | 204 | 224 | IPR005539 | GO:0003677 | |
Cma02g01492 | 301 | ProSiteProfiles | 'Homeobox' domain profile. | 224 | 287 | IPR001356 | GO:0003677 | |
Cma02g01492 | 301 | PANTHER | HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 | 2 | 301 | - | - | |
Cma02g01492 | 301 | Pfam | Homeobox KN domain | 244 | 283 | IPR008422 | GO:0003677|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma02g01492 | Cma15g01189 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g01492 | Cma-Chr2:8524124 | Cma09g00430 | Cma-Chr9:1876271 | 1.99E-133 | dispersed | |
Cma15g01189 | Cma-Chr15:7530904 | Cma02g01492 | Cma-Chr2:8524124 | 1.93E-150 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34532 | PF03791 | KNOX2 | 1.20E-17 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma02g01492 | - | - | cmos:111459669 | 568.926 |