Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01494 ATGGTGAGGGGAAAGACCCAAATGAAGCGCATAGAGAATGCTACAAGCCGGCAAGTGACCTTCTCAAAGCGGAGAAATGGGCTGCTCAAGAAGGCCTTTGAGCTATCAGTTCTTTGTGATGCTGAAGTTGCTCTCATCATTTTCTCTCCAAGAGGCAAACTTTATGAGTTTTCAAATTGCAGTATGAACAAGACAATTGATCGGTATCAGAACAGAACCAAAGAAATGATGTGTTCAAACAACCAAGGTTTAGAAGATGTGCAGTTGGAGAAGGACTGCATGACTAAGAAGTTACAGCACCTTGAAGTTTGTAAAAGAAAATTGATGGGAGATGGCTTGGATTTGTGCTCCATGGAAGAGTTGCAGCAGCTTGAAAGGCAAATTGAAAGAAGCTTAACCAAAATTAGGTCAAGAAAGTATCAATTGCTGAAGGAAGAAATTACGAAGCTGAAGGAAGAGGAGAAGATGTTGCTGGAAGAAAATGCAGCTCTCCTGAAGAAGGTCAAGCAATCTTTTTCCCTGGAACTGTTCCTCGTTGGAAGTGAATGGAAGCACCAAGAAGAGGCCATGGATGTTGAGACCCAACTGTTCATAGGGCCATCAGAAAGAAGAGGCGGCAGTGGCTTCCTGTGTAGGGACAACAACAACGTTTAA 654 43.12 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNCSMNKTIDRYQNRTKEMMCSNNQGLEDVQLEKDCMTKKLQHLEVCKRKLMGDGLDLCSMEELQQLERQIERSLTKIRSRKYQLLKEEITKLKEEEKMLLEENAALLKKVKQSFSLELFLVGSEWKHQEEAMDVETQLFIGPSERRGGSGFLCRDNNNV 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8539914 8543899 + CmaCh02G014940.1 Cma02g01494 289245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01494 217 Coils Coil 118 138 - -
Cma02g01494 217 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cma02g01494 217 PANTHER MADS BOX PROTEIN 1 202 - -
Cma02g01494 217 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cma02g01494 217 Pfam K-box region 85 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma02g01494 217 Gene3D - 14 93 IPR036879 GO:0003677|GO:0046983
Cma02g01494 217 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma02g01494 217 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cma02g01494 217 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cma02g01494 217 PANTHER MADS-BOX PROTEIN SOC1 1 202 - -
Cma02g01494 217 SUPERFAMILY SRF-like 3 84 IPR036879 GO:0003677|GO:0046983
Cma02g01494 217 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cma02g01494 217 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cma02g01494 217 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cma02g01494 217 Coils Coil 140 167 - -
Cma02g01494 217 CDD MADS_MEF2_like 3 71 IPR033896 GO:0000977|GO:0045944
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01494 Cma06g01116 CCT
Cma02g01494 Cma15g01186 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01494 Cma-Chr2:8539914 Cma15g01396 Cma-Chr15:8798660 9.63E-56 dispersed
Cma08g00944 Cma-Chr8:5883424 Cma02g01494 Cma-Chr2:8539914 2.02E-34 transposed
Cma15g01186 Cma-Chr15:7507315 Cma02g01494 Cma-Chr2:8539914 3.76E-93 wgd
Cma02g01025 Cma-Chr2:6091642 Cma02g01494 Cma-Chr2:8539914 4.48E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34533 PF01486 K-box 3.70E-22 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01494 - - csv:101220518 281.182