Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01495 ATGAGGGGTTTGACGGCGAATTCTTCTGTTCTTCTTGCTCCTTCAAACCCATATCAGAGTTCCTCTCTGTTTCCTTCTAAACGCAAGTCCAAGAAGAAGAACCATGCTATGGTTCCTGTAGCGAGGCTGTTTGGGCCGGCCATATTTGAAGCTTCCAAGTTGAAGGTTCTGTTTTTAGGAGTGGATGAGAAGAAGCATCCTGGAAAATTTCCCAGGACTTACACGCTTACACACAGCGATATTACCTCTAAACTTACTCTCGCTATTTCTCAGACCATTAACAACTCTCAGCTGCAAGGATGGTATAATTGGCTACAAAGAGATGAAGTGGTGGGAGAGTGGAAGAAGGTGAAGGGAAAGATGTCGCTTCATGTTCATTGCCATATCAGCGGCGGCCATTTTCTTTTAGATCTCTGTGCTAATCTCAGATACTTCATCTTCCGCAAAGAACTCCCTGTGGTTCTGAATGCGTTTGTCCATGGAGATGTGGATTTATTCAACAATTACCCAGAATTACAGGATGCGTTGGTCTGGGTTTATTTCCATTCAAAGATCCCAGAATTCAACAAAGTTGAATGCTGGGGCCCACTCAAGGATCCAGCCCCACCTTCAGCTGGACTTGATGGGTCCAATTCAGACGGGTCCATATGGGATATGGGCCAAATGGAGCGGCCCAAACCTTGCCAAGAAGACTGCTCTTGTTGCTTCCCAACCATCCCTTCCATTTCATGGTCACCCAAAAATGAGTTGGAGAGTACCTGA 762 45.8 MRGLTANSSVLLAPSNPYQSSSLFPSKRKSKKKNHAMVPVARLFGPAIFEASKLKVLFLGVDEKKHPGKFPRTYTLTHSDITSKLTLAISQTINNSQLQGWYNWLQRDEVVGEWKKVKGKMSLHVHCHISGGHFLLDLCANLRYFIFRKELPVVLNAFVHGDVDLFNNYPELQDALVWVYFHSKIPEFNKVECWGPLKDPAPPSAGLDGSNSDGSIWDMGQMERPKPCQEDCSCCFPTIPSISWSPKNELEST 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8544313 8546016 + CmaCh02G014950.1 Cma02g01495 289246

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01495 253 Pfam Staygreen protein 49 199 IPR024438 -
Cma02g01495 253 PANTHER PROTEIN STAY-GREEN 1, CHLOROPLASTIC-RELATED 11 249 - -
Cma02g01495 253 PANTHER PROTEIN STAY-GREEN 1, CHLOROPLASTIC 11 249 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01495 K22013 SGR, SGRL; magnesium dechelatase [EC:4.99.1.10] - csv:101206296 473.011
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01495 Cma-Chr2:8544313 Cma04g02408 Cma-Chr4:16628986 3.93E-55 dispersed
Cma02g01495 Cma-Chr2:8544313 Cma15g00641 Cma-Chr15:3029734 3.91E-58 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g424 . . . . . . . . . . Cma02g01495 . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00337 . . . . . . . . . . . . . . . . . . . Bhi12g00332 . . Lac11g2158 Hepe06g1598 . Lcy12g1716 Cla01g00317 Cam01g0327 Cec01g0319 Cco01g0336 Clacu01g0329 Cmu01g0313 Cre09g2198 Lsi09g00322 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012467 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g01495 Cma_Chr02 FPKM 23.00313 26.037363 111.288826 116.255226 16.254269 11.842974 16.218132 126.432732 129.038269 138.587036