Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01496 ATGGAAGATCAACCCATTCCTCAGAGGACCCAACAATCATCTTCCAGGCCTTCTCCTTCTCCTTCTTCTTCCTCCAATTCCTCATCCTCCCACCTCAATTTGCCCCCTTCAATGTCCCGAGCCCCTCATTCTCTTGAAACCCTAACCCCATCTCGCCAAATTGACCGCATGATCAATATTAATCACCATTTGTCGCCTTCCAGAGCCATCTACTCCGATAGGTTCATTCCCAGTAGATCTGGTTCCAATTTTGCCTTCTTTGATATTTCCCCTGTCTCCAATTCCCACTCCGATGCTCGGGAAGATACTTCCTCTGCCTACGTTACCCTGCTTCGCACCGCTTTGTTTGGCCCTGATGCTGGAGTAGTTCCTCCTGCTACTCCCGAGAAGAGGACCTCCCCAATGTCGCTTCCCAATCATAATATCTTTCGCTACAAGACGGAGACCAGGAGGTCAATGGACTCCCTCTCGCCTTTTGGCTTTGATAATGCAGCTCCTGGGATTAATCCTAGTCCGGTTAAGACTCCACGGAAGGTTCCTCGATCGCCTTATAAGGTCTTGGATGCACCTGCTCTGCAAGATGATTTTTATCTGAATCTTGTGGATTGGTCTTCGCATAATGTCCTGGCTGTTGGGCTGGGTAATTGTGTTTATCTCTGGAATGCTTGTAGCAGCAAGGTCACCAAGTTATGCGACTTGGGAATTGATGACAGTGTGTGTTCAGTAGGCTGGGCACAGCGTGGAACTCATCTTGCTGTTGGCACTAGCAATGGGAAAGTACAGATTTGGGATGCATCACGCTGTAAAAGGATCAGGACCATGGAGGGCCATCGATTACGAATTGGGGCCTTAGCTTGGAGCTCATCTCTTTTATCATCTGGTAGCCGGGACAAGAGTATTCTTCAGAGAGATATTCGGGCTCAGGATGATTTTGTGTCTAAACTTTCAGGCCATAAATCAGAGGTTTGTGGATTGAAATGGTCATACGACAACCGTGAATTAGCATCAGGAGGGAATGATAACAGATTATTTGTTTGGAATCAACATTCAACCCAACCAGTACTTAAATTTTATGAGCACACAGCTGCTGTAAAAGCTATAGCATGGTCTCCTCATCTTCATGGACTACTTGCATCAGGGGGTGGAACCGCAGATCGATGTATTCGTTTTTGGAACACCACCACTAATACACACTTGAGCTGCATGGATACTGGAAGTCAGGTATGCAATCTGGCATGGTCTAAGAATGTTAATGAACTTGTTAGTACTCATGGATTCTCCCAAAACCAAATAATAGTCTGGAGATATCCAACTATGTCCAAGTTGGCAACACTGACTGGCCATACATTCAGAGTTCTTTATCTTGCTATATCCCCTGATGGACAGACCATTGTAACAGGAGCTGGTGATGAGACTCTAAGATTTTGGAATGTCTTCCCCTCGCCAAAATCTCAGAACACAGAGAATGAAATCGGAGCGTCCTTCCTTGGACGAACCACAATTCGTTAA 1509 46.06 MEDQPIPQRTQQSSSRPSPSPSSSSNSSSSHLNLPPSMSRAPHSLETLTPSRQIDRMININHHLSPSRAIYSDRFIPSRSGSNFAFFDISPVSNSHSDAREDTSSAYVTLLRTALFGPDAGVVPPATPEKRTSPMSLPNHNIFRYKTETRRSMDSLSPFGFDNAAPGINPSPVKTPRKVPRSPYKVLDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAQRGTHLAVGTSNGKVQIWDASRCKRIRTMEGHRLRIGALAWSSSLLSSGSRDKSILQRDIRAQDDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKFYEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLAWSKNVNELVSTHGFSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNTENEIGASFLGRTTIR 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8546031 8549806 - CmaCh02G014960.1 Cma02g01496 289247

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01496 502 ProSiteProfiles Trp-Asp (WD) repeats profile. 232 273 IPR001680 GO:0005515
Cma02g01496 502 ProSiteProfiles Trp-Asp (WD) repeats profile. 315 356 IPR001680 GO:0005515
Cma02g01496 502 Gene3D - 173 482 IPR015943 GO:0005515
Cma02g01496 502 SUPERFAMILY WD40 repeat-like 184 484 IPR036322 GO:0005515
Cma02g01496 502 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 445 478 - -
Cma02g01496 502 Pfam Anaphase-promoting complex subunit 4 WD40 domain 234 288 IPR024977 -
Cma02g01496 502 MobiDBLite consensus disorder prediction 1 44 - -
Cma02g01496 502 ProSitePatterns Trp-Asp (WD) repeats signature. 464 478 IPR019775 -
Cma02g01496 502 ProSiteProfiles Trp-Asp (WD) repeats profile. 445 478 IPR001680 GO:0005515
Cma02g01496 502 SMART WD40_4 180 221 IPR001680 GO:0005515
Cma02g01496 502 SMART WD40_4 267 304 IPR001680 GO:0005515
Cma02g01496 502 SMART WD40_4 394 435 IPR001680 GO:0005515
Cma02g01496 502 SMART WD40_4 308 347 IPR001680 GO:0005515
Cma02g01496 502 SMART WD40_4 350 392 IPR001680 GO:0005515
Cma02g01496 502 SMART WD40_4 438 477 IPR001680 GO:0005515
Cma02g01496 502 SMART WD40_4 224 264 IPR001680 GO:0005515
Cma02g01496 502 PANTHER PROTEIN FIZZY-RELATED 1 27 502 - -
Cma02g01496 502 Pfam WD domain, G-beta repeat 352 392 IPR001680 GO:0005515
Cma02g01496 502 Pfam WD domain, G-beta repeat 312 347 IPR001680 GO:0005515
Cma02g01496 502 Pfam WD domain, G-beta repeat 441 477 IPR001680 GO:0005515
Cma02g01496 502 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 315 347 - -
Cma02g01496 502 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 27 502 IPR033010 GO:0010997|GO:0097027|GO:1904668
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01496 K03364 CDH1, FZR1; cell division cycle 20-like protein 1, cofactor of APC complex - csv:101220762 950.658
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g01496 Cma15g01185 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01496 Cma-Chr2:8546031 Cma04g02657 Cma-Chr4:18062050 0 dispersed
Cma02g01003 Cma-Chr2:5963564 Cma02g01496 Cma-Chr2:8546031 3.96E-114 transposed
Cma02g01625 Cma-Chr2:9209156 Cma02g01496 Cma-Chr2:8546031 2.03E-114 transposed
Cma15g01185 Cma-Chr15:7501492 Cma02g01496 Cma-Chr2:8546031 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g425 . . . . . . . Bma14g00575 . . Cma02g01496 Cma15g01185 Car02g01258 Car15g01073 . . Cpe05g00294 . . . . . . . . . . . . . . . . Cone6ag0735 Cone9ag0739 . Csa05g00338 Chy09g01171 . Blo03g00379 . Bda07g00507 . . Bpe11g00694 . . . Cmo02g01537 Cmo15g01249 . . . . . Cpe13g00188 Bhi12g00333 . . Lac11g2159 Hepe06g1599 . Lcy12g1717 Cla01g00318 Cam01g0328 Cec01g0320 Cco01g0337 Clacu01g0330 Cmu01g0314 Cre09g2197 Lsi09g00323 . . Cme09g01704
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006983 1 1 1 1 1 1 4 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g01496 Cma_Chr02 FPKM 9.476248 10.642599 6.311476 5.485128 7.908243 7.342162 7.493576 5.19493 5.480532 5.358842