Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01497 ATGGGCTTCTTCTTCTTTTTCTTCTTCTTCTCGTCGGCCTCATCAATGGCCTTCCTCAAAGCTCAGCCCCACAAACTCCAATCAACCCATCTTCTCGATCTCTACATCAGAGATTACACATTCAAGTCCCTCGACAACACAATCAAAACAGGGACACTTCACAACGTCCCACTGCCCCAAAATTTCTCCGGCGTCAACGTCGACACGGCCAGGTTCCGATGCGGAAGTTTACGGCGGTACGGCGCCAGGGTGAAGGAATTCCATCTGGGTGTCGGCGTTTCTTTGAACCCATGTGCGGAGAGAATCGTAATCATCCGACAAAATTTGGGCTCCAATTGGTCCTCCATTTACTTCAACAGCTACCATTTAACTGGTTACCAATTAGTGTCTTCAATTTTGGGGCTTTTGGCTTATAATTCCGGCTACTACAGTAATAGTTCCAGTTCCGCTGTTCCATTTGAGGTTGGAATATCTGCCGGAGAAAAACCCATCACGATAGACTTCAGAAACTCGACGAGAATGGAGAATGTTTCGGGAATGAGGCCAATTTGTGCGAGCTTTGAGAGGGATGGGAGAGTGACTTTGGCAAAGGAAATTTCGCCATTGATATGCTCTGTTTTGAGACAGGGCCATTTTGGGTTGGTAGTGGAGGAGCCAGAGCCGGTGGAGCTGAGGAAAAAGGAGCGGCCGTGGAAGGTAGCGATCGGGAGCTCGATTGGGGCGGCGATCGGAGCGTTTCTGTTGGGGTTGCTTTTGGTGGCGATGTTTGTTAGGGTGAAGAAGAGGACGAGAATGGAGGAGCTGGAAATTAGAGCGTACGAAGAGGAAGCTCTGCAGGTTTCAATGGTCGGACACGTCAGAGCTCCGACGGCTCCGGGGACTCGAACTTTGCCGTCGATCGAACATGAGTATTTGCCACCGTCTCGTCGACGCTGA 936 50.32 MGFFFFFFFFSSASSMAFLKAQPHKLQSTHLLDLYIRDYTFKSLDNTIKTGTLHNVPLPQNFSGVNVDTARFRCGSLRRYGARVKEFHLGVGVSLNPCAERIVIIRQNLGSNWSSIYFNSYHLTGYQLVSSILGLLAYNSGYYSNSSSSAVPFEVGISAGEKPITIDFRNSTRMENVSGMRPICASFERDGRVTLAKEISPLICSVLRQGHFGLVVEEPEPVELRKKERPWKVAIGSSIGAAIGAFLLGLLLVAMFVRVKKRTRMEELEIRAYEEEALQVSMVGHVRAPTAPGTRTLPSIEHEYLPPSRRR 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8553111 8554046 - CmaCh02G014970.1 Cma02g01497 289248

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01497 311 Pfam Protein of unknown function (DUF1191) 27 217 IPR010605 -
Cma02g01497 311 PANTHER PROTEIN, PUTATIVE (DUF1191)-RELATED 5 305 IPR010605 -
Cma02g01497 311 PANTHER PROTEIN, PUTATIVE (DUF1191)-RELATED 5 305 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01497 - - - cmos:111430354 475.707
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01497 Cma-Chr2:8553111 Cma07g01200 Cma-Chr7:6591907 4.91E-42 dispersed
Cma02g01497 Cma-Chr2:8553111 Cma03g00275 Cma-Chr3:3723086 5.05E-43 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g426 . . . . . . . . . . Cma02g01497 . Car02g01259 Car15g01072 . . Cpe05g00293 . . . . . . . . . . . . . . . . . Cone19ag1460 . Csa05g00339 Chy09g01170 Cme07g01592 . . . . . . . . . Cmo02g01538 Cmo15g01248 . . . . . Cpe13g00189 Bhi12g00336 . . Lac11g2160 Hepe06g1600 . Lcy12g1718 Cla01g00319 Cam01g0329 Cec01g0321 Cco01g0338 Clacu01g0331 Cmu01g0315 Cre09g2196 Lsi09g00324 Csa04g00632 . Cme09g01703
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008782 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g01497 Cma_Chr02 FPKM 3.376068 5.874521 0.675765 1.431678 3.225066 3.122738 4.278554 0.0 0.0 0.0