Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01498 ATGGTTGCTTTCCCTTCCCTTTTTCTTCTTCTATTGCTCAACTTTCATTATGTTGGGGCTTTAGTGACTGAGCTTCCGTTGATCAATCTTCAAACGTGCATTGTGCATGTGAAGAAACCAGAGACAACAGACGATCTTGAGAGCTGGCATCAATCGTTCTTACCGTCGAGTTCGAGTTTGCTATACTCGTATCGAAATGTGATGAGTGGTTTTGCTGCAAGACTAAGTGAAGAACAAGTGAAAGCAATGGAAGAGAAGGATGGTTTTGTGTCAGCAAGGCGTGAAAGGATATTGCAATTGCATACAACGCATACCCCTGATTTTCTTGGTTTGAATCGCCAATTTGGGTTTTGGAAAGATTCAAACTTTGGAAAGGGAGTGATCGTAGGAGTGTTGGATGGCGGAATTGCGCCAAGCCATCCTTCATTTGATGATGTGGGAATGCCACCACCGCCACCCAAATGGAAAGGAAAATGCGAGTTTAATTTCTCAGCCTGCAACAACAAGCTTATAGGTGCGAGATCTTTTAATCTAGCAACAAAAGTCTTGAAAGGAGAGACAACGATGGATGACTCTCCTATTGATGAAGATGGTCATGGGACTCACACAGCGAGCACAGCTGCTGGTGCCTTCGTCAAGGGCGCTGAGGCATTGGGAAACGCTAAAGGCACGGCTGTTGGCAAGGCCCCTTTAGCTCATCTAACAATTTACAAAGTTTGCTTTGGAGAAGTCTGCCCTGATACCTACATTCTCGCAGCGCTTGATGCCGCTGTTGAAGACGGCGTCGATGTGCTCTCACTCTCGCTTGGGAGCCCATCGGTTCCATTCTTCCAAGACTTAGTCGCCATAGGTGCATTTGCAGCCATTCAAAAGGGGATTTTTGTGAGTTGCTCAGCTGCTAATTCAGGCCCTTTTAAAGCCACATTGTCCAACGAAGCCCCAGAAGGATCATTGAAAGACATCGACCTAAAGGGAAAATTTGTGGTATGCGAAAGAGGAGGAGGAATTGCAAGAATTGCAAAAGGGACTGAAGTCAAGAACGCAGGGGGCGCCGCCATGATCCTCCTAAACCAACAACAAGATGGGTTCATTACAGAAGCAGATGCTCACGTTCTTCCGGCAAGCCACGTCAGCCACAAGGCGGCATTGAAGATCAAAGCCTACATAAACTCAACAACATACCCAACAGCCACAATTATTTTCAAAGGAACCGTCATTGGCGATGACAACTTTTCACCCGCCATAGCTTCTTTTTCATCTCGAGGGCCCAGCGTTGCAAGCCCTGGAATTTTGAAGCCCGACATAACCGGTCCAGCTCTAATCAAAAGCTCTCATCCTGATTGGTCACCGGCCGCCATTAAATCCGCCATATTGACAACCGCTGACATAACAAATCTCGAAGGCCAGCCAATTGTCGATGAAAATTTACAACCGGCGGATTTGTTTGCAACTGGCGCTGGTCATGTCAACCCATCAAAAGCAGCCGACCCAGGATTAGTTTATGACATTCAACCCGATGATTACATTCCTTATCTTTGTGGATTGGGATACAAAAGTAACGAAGTTGCAAGTATTGCACATATTCCTGTTCCTCAGTTTCCCTCCATCTCTCCCTTGGACAGCAATAAAAGTGGCTCTCAAAAGCCCAAAAATGGCCGCCGGAAAAACCCACCCGCCAACAGTTCCGATGATATTGGCGATATGAACCCCAACGAACACAAAAAGAAGAAGATTATGCACAGAGATGTGGAGCGGCAGAGAAGGCAAGATATGGCTTCTCTTTACGCCACTCTTCGCTCACTTCTCCCTCATGAATATCTCAAGGGAAAACGGTCAATATGTGACCATATGCTGGAAGCAGTGAAGTACATTCGACATATGCAGAGCAGGATTCAAGATTTGTCTAATAAAAGAGACGAGCTGAAAAGGGTGTCTGACAAAAATCCAGTGGCTACCATGGTGGAGACCCTTGATTCCTCTAAAAGGGAGTCGGTGTTGGTGAGGGCCAGAAATGAATCGGGAGAAGTTCAAGTTGTTTTAAACACTGCTACCCAACACAACCTCCCTGTTTCCAACATTCTTCGAGATTTAGCCACCGAAGGGCTCGAAATCCTTAGCTACATTTCCACCAAAGTAAATGACAGCTTCATTCACACCATCGAATGCCAAACTCTAGTTGATTCCAACCATACTCCAAGTATCGACGTGTCCGAGTTGCAACATAAGTTAATAAATTTGGAATATTTTCTTTTGAATTAG 2259 45.64 MVAFPSLFLLLLLNFHYVGALVTELPLINLQTCIVHVKKPETTDDLESWHQSFLPSSSSLLYSYRNVMSGFAARLSEEQVKAMEEKDGFVSARRERILQLHTTHTPDFLGLNRQFGFWKDSNFGKGVIVGVLDGGIAPSHPSFDDVGMPPPPPKWKGKCEFNFSACNNKLIGARSFNLATKVLKGETTMDDSPIDEDGHGTHTASTAAGAFVKGAEALGNAKGTAVGKAPLAHLTIYKVCFGEVCPDTYILAALDAAVEDGVDVLSLSLGSPSVPFFQDLVAIGAFAAIQKGIFVSCSAANSGPFKATLSNEAPEGSLKDIDLKGKFVVCERGGGIARIAKGTEVKNAGGAAMILLNQQQDGFITEADAHVLPASHVSHKAALKIKAYINSTTYPTATIIFKGTVIGDDNFSPAIASFSSRGPSVASPGILKPDITGPALIKSSHPDWSPAAIKSAILTTADITNLEGQPIVDENLQPADLFATGAGHVNPSKAADPGLVYDIQPDDYIPYLCGLGYKSNEVASIAHIPVPQFPSISPLDSNKSGSQKPKNGRRKNPPANSSDDIGDMNPNEHKKKKIMHRDVERQRRQDMASLYATLRSLLPHEYLKGKRSICDHMLEAVKYIRHMQSRIQDLSNKRDELKRVSDKNPVATMVETLDSSKRESVLVRARNESGEVQVVLNTATQHNLPVSNILRDLATEGLEILSYISTKVNDSFIHTIECQTLVDSNHTPSIDVSELQHKLINLEYFLLN 752
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8558222 8565908 - CmaCh02G014980.1 Cma02g01498 289249

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01498 752 Coils Coil 624 644 - -
Cma02g01498 752 CDD Peptidases_S8_3 98 462 IPR034197 -
Cma02g01498 752 Pfam Peptidase inhibitor I9 34 101 IPR010259 -
Cma02g01498 752 MobiDBLite consensus disorder prediction 567 583 - -
Cma02g01498 752 CDD bHLH_AtORG2_like 576 648 - -
Cma02g01498 752 Pfam Subtilase family 124 439 IPR000209 GO:0006508|GO:0008236
Cma02g01498 752 Pfam PA domain 306 384 IPR003137 -
Cma02g01498 752 SMART finulus 581 633 IPR011598 GO:0046983
Cma02g01498 752 ProSiteProfiles Serine proteases, subtilase domain profile. 108 495 - -
Cma02g01498 752 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 28 101 IPR037045 -
Cma02g01498 752 MobiDBLite consensus disorder prediction 534 583 - -
Cma02g01498 752 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 574 645 IPR036638 GO:0046983
Cma02g01498 752 Gene3D - 316 407 - -
Cma02g01498 752 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 439 527 IPR045051 -
Cma02g01498 752 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 316 439 IPR045051 -
Cma02g01498 752 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 27 314 IPR045051 -
Cma02g01498 752 SUPERFAMILY Subtilisin-like 100 499 IPR036852 GO:0004252|GO:0006508
Cma02g01498 752 Gene3D - 567 655 IPR036638 GO:0046983
Cma02g01498 752 Gene3D Peptidase S8/S53 domain 408 438 IPR036852 GO:0004252|GO:0006508
Cma02g01498 752 Gene3D Peptidase S8/S53 domain 440 508 IPR036852 GO:0004252|GO:0006508
Cma02g01498 752 Gene3D Peptidase S8/S53 domain 126 315 IPR036852 GO:0004252|GO:0006508
Cma02g01498 752 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 575 627 IPR011598 GO:0046983
Cma02g01498 752 PRINTS Subtilisin serine protease family (S8) signature 124 143 IPR015500 -
Cma02g01498 752 PRINTS Subtilisin serine protease family (S8) signature 195 208 IPR015500 -
Cma02g01498 752 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.7 439 527 - -
Cma02g01498 752 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.7 316 439 - -
Cma02g01498 752 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.7 27 314 - -
Cma02g01498 752 MobiDBLite consensus disorder prediction 535 566 - -
Cma02g01498 752 Pfam Helix-loop-helix DNA-binding domain 576 628 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01498 - - - cpep:111786140 761.525
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01498 Cma-Chr2:8558222 Cma19g00117 Cma-Chr19:695950 4.96E-136 dispersed
Cma15g01183 Cma-Chr15:7484544 Cma02g01498 Cma-Chr2:8558222 2.05E-68 dispersed
Cma20g00204 Cma-Chr20:971079 Cma02g01498 Cma-Chr2:8558222 3.79E-06 dispersed
Cma15g01182 Cma-Chr15:7477165 Cma02g01498 Cma-Chr2:8558222 3.67E-29 wgd
Cma16g00165 Cma-Chr16:720028 Cma02g01498 Cma-Chr2:8558222 3.66E-27 wgd
Cma18g01204 Cma-Chr18:9543067 Cma02g01498 Cma-Chr2:8558222 1.46E-29 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g434 . . . . . . . . . Cmo16g01045 Cma02g01498 . Car02g01261 . . . Cpe05g00291 . . . . . . . . . . . . . . Cone8ag0344 . . . . Csa05g00344 Chy09g01163 . . . Bda07g00509 . . . . . . Cmo02g01539 . . . . . . . Bhi12g00343 . . . Hepe06g1605 . Lcy12g1726 . . . . . . . Lsi09g00337 . . Cme09g01695
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002315 3 2 1 2 2 2 1 1 3 3 2 2 1 2 2 1 2 3 1 1 2 8 1 0 2 5 1 1 2 3 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34534 PF00082 Peptidase_S8 4.90E-22 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g01498 Cma_Chr02 FPKM 2.644635 3.731192 0.0 0.0 0.077888 0.0 0.149798 0.0 0.0 0.0