Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01509 ATGCCACTGTGCGACTCGCTACAAAGTTTGGTGTTCTTTACTCGTAGGGTATCTTATTGTGTTGTGCTGTATCATCTTCTTCCGAATCGGGAGTTCTGTCATCGACTCAAAATGGCCGCCTCTTCTACTCCGTGTTTTCAACCGCAAATTATAACTTCTCAATCTCCGATCAGCCCTGCGACGAAGGTTTACTCGGGATTAAAGCTTCAATCTGCTAGTCCATTTGGAGGAGCGAAACCTAATCTTACTGTTGAATTCTATGGAAAAGTTCATAAAAGTCTACAATCCAGTACAAATAACAAAAAGGCATCCCGTATGCAGTTTCAGATGATGCCTATCGGGACACCAAGGGTGCCTTACAGAAATCCTGGCGAGGGAACTTGGCAATGGGTTGATTTGTGGAATGCCCTTTATCGAGAACGAGTTATTTTCATCGGGCAAAACATTGATGAAGAGTTTAGCAATCAAATTTTGGCCACCATGCTATATCTCGACAGCATTGAATCTTCCAAAGCACTCTATATGTACTTAAATGGTCCAGGTGGAGATTTAACTCCAAGTTTGGCCATCTACGACACAATGCAGAGCTTGAAGAGTTCAGTACGTACCCATTGCGTGGGTTATGCCTATGATCTGGCAGCATTTCTTCTAGCAGCTGGAGAAAAGGGTCACCGCACTGCAATGCCTCTATCAAGAATTGCTTTACAATCCCCAGGTGGAGCTGCTCGTGGCCAGGCTGATGATGTTCGAAACGAAGCAAACGAGCTCTTGAGAATCAGGGATTATCTTTTCAATGAGCTTTCTAAGAAAACAGGCCAGCCTGTTGAACAGATTAACAAGGACTTGAGTCGAATGAAGCGATTTAATGCTCAGGCAGCTCTTGAGTATGGTCTTATCGACCGTATAGTCAGGCCAGCTCGCATTAAGGCCGATGCACCACGCAAGGATGATGGAGCAGGGCTTGGTTAG 969 44.99 MPLCDSLQSLVFFTRRVSYCVVLYHLLPNREFCHRLKMAASSTPCFQPQIITSQSPISPATKVYSGLKLQSASPFGGAKPNLTVEFYGKVHKSLQSSTNNKKASRMQFQMMPIGTPRVPYRNPGEGTWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSIESSKALYMYLNGPGGDLTPSLAIYDTMQSLKSSVRTHCVGYAYDLAAFLLAAGEKGHRTAMPLSRIALQSPGGAARGQADDVRNEANELLRIRDYLFNELSKKTGQPVEQINKDLSRMKRFNAQAALEYGLIDRIVRPARIKADAPRKDDGAGLG 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8605657 8609543 + CmaCh02G015090.1 Cma02g01509 289260

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01509 322 Gene3D - 103 311 - -
Cma02g01509 322 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 114 306 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cma02g01509 322 PRINTS Clp protease catalytic subunit P signature 224 243 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cma02g01509 322 PRINTS Clp protease catalytic subunit P signature 172 192 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cma02g01509 322 PRINTS Clp protease catalytic subunit P signature 132 147 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cma02g01509 322 PRINTS Clp protease catalytic subunit P signature 281 300 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cma02g01509 322 PRINTS Clp protease catalytic subunit P signature 203 220 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cma02g01509 322 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT-RELATED PROTEIN 2, CHLOROPLASTIC 46 316 - -
Cma02g01509 322 CDD S14_ClpP_2 132 302 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cma02g01509 322 Pfam Clp protease 129 304 IPR023562 -
Cma02g01509 322 SUPERFAMILY ClpP/crotonase 125 306 IPR029045 -
Cma02g01509 322 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 46 316 IPR023562 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01509 K01358 clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] - csv:101210460 473.011
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g01509 Cma16g01147 CCT
Cma02g01509 Cma15g01171 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01509 Cma-Chr2:8605657 Cma14g00935 Cma-Chr14:4854558 1.93E-41 dispersed
Cma05g00825 Cma-Chr5:5365686 Cma02g01509 Cma-Chr2:8605657 2.99E-31 transposed
Cma14g01011 Cma-Chr14:5317101 Cma02g01509 Cma-Chr2:8605657 3.65E-26 transposed
Cma15g01171 Cma-Chr15:7422344 Cma02g01509 Cma-Chr2:8605657 2.54E-44 transposed
Cma15g01172 Cma-Chr15:7423500 Cma02g01509 Cma-Chr2:8605657 3.66E-15 transposed
Cma15g01170 Cma-Chr15:7417031 Cma02g01509 Cma-Chr2:8605657 7.50E-25 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g469 . . Bda06g00053 . . Bpe07g00146 . . . Cmo16g01198 Cma02g01509 Cma15g01171 . Car15g01060 . Cpe14g00951 . . . . . . . . . . . . . . . Cone8ag0358 Cone12ag0350 . . . Csa05g00366 Chy09g01142 . . . . . . . . Bma12g00130 . . Cmo15g01233 . Cma16g01147 . Car16g01144 . . Bhi12g00364 . . . . . . . . . . . . . Lsi09g00370 . . Cme09g01674
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002594 3 2 3 4 3 1 2 1 1 1 1 1 1 2 2 3 1 4 1 1 2 2 2 1 2 2 2 4 3 1 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g01509 Cma_Chr02 FPKM 24.480137 29.771954 43.547871 44.283871 131.724792 137.936096 140.378387 47.648087 49.863972 47.38113