Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma02g01510 | ATGGAGGGAAGAGATGATGGTGCAAGTAGTGGAGTTACTGTTGTGGGATCAGATGCTCCATCGGAGTATCAAATAGCTCCCAGAACCACTGATAACCCACCGCAGACCGGTGGATCAACGCCATCTGCGGCGGAGGCGGCCGCTTCTCAACCAGCTTCGACTCCGTCGGCCTCGGCTCCGCTGCCCACGGCGGCCTCCTCAGTTCCGGGAAAGAAGAAAAGAGGGCGGCCGAGAAAATATGGACCCGATGGCTCTGTCAGTATGGCTCTGTCTCCGAAGCCAATATCATCATCGGTGCCGCCGCCGGTGATTGACTTCTCGACGGAGAAGAAGGGGAAAGTGCGGCCGGCGAGCGCTGTGAGCAAAAGAAAGTTCGAAGTGGATAATTTAGGTGACTGGGTTCCATGTTCTGTTGGTGCAAATTTTACACCTCATATCATCACTGTCAACACAGGCGAGGATGTCACAATGAAGATAATATCCTTTTCTCAGCAAGGGCCTCGAGCTATATGTATTTTGTCTGCAAACGGTGTGATCTCAAGTGTCACTCTTCGTCAGCCTGACTCCTCTGGAGGAACACTAACATATGAGGGTCGCTTCGAAATACTGTCCTTGTCTGGCTCATTCATGCCTAGTGATAATGGAGGAACTCGAGGTAGATCTGGTGGAATGAGTGTTTCCTTAGCAAGTCCAGACGGGCGTGTCGTAGGTGGCGGAGTAGCTGGTCTATTAGTAGCTGCAAGTCCTGTTCAGGTTGTTGTAGGGAGTTTTCTATCTGGAAATCAACAAGAGCAGAAACCAAAAAAGCCAAAACAAGATACTATTTCAACGCCCTCACCAACCGCTGCCATTCCGATATCTTGTGTCGATCCTAAGTCCAACCTTTCCCCTTCGAGCTCCTTTCGTGGTGATAACTGGTCGATGCTGCCAAATGATTCCAGGAATAAGCCAACTGATATCAATGTACCCCTACCCAGTGCTTGA | 984 | 50.51 | MEGRDDGASSGVTVVGSDAPSEYQIAPRTTDNPPQTGGSTPSAAEAAASQPASTPSASAPLPTAASSVPGKKKRGRPRKYGPDGSVSMALSPKPISSSVPPPVIDFSTEKKGKVRPASAVSKRKFEVDNLGDWVPCSVGANFTPHIITVNTGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSDNGGTRGRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQQEQKPKKPKQDTISTPSPTAAIPISCVDPKSNLSPSSSFRGDNWSMLPNDSRNKPTDINVPLPSA | 327 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 8610196 | 8614124 | - | CmaCh02G015100.1 | Cma02g01510 | 289261 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma02g01510 | 327 | MobiDBLite | consensus disorder prediction | 23 | 63 | - | - | |
| Cma02g01510 | 327 | MobiDBLite | consensus disorder prediction | 1 | 110 | - | - | |
| Cma02g01510 | 327 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 | 9 | 325 | - | - | |
| Cma02g01510 | 327 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 9 | 325 | IPR039605 | GO:0003680 | |
| Cma02g01510 | 327 | MobiDBLite | consensus disorder prediction | 260 | 327 | - | - | |
| Cma02g01510 | 327 | ProSiteProfiles | PPC domain profile profile. | 139 | 281 | IPR005175 | - | |
| Cma02g01510 | 327 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 141 | 262 | - | - | |
| Cma02g01510 | 327 | Gene3D | - | 144 | 274 | - | - | |
| Cma02g01510 | 327 | MobiDBLite | consensus disorder prediction | 291 | 327 | - | - | |
| Cma02g01510 | 327 | CDD | DUF296 | 143 | 234 | IPR005175 | - | |
| Cma02g01510 | 327 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 144 | 257 | IPR005175 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma02g01510 | Cma-Chr2:8610196 | Cma14g01978 | Cma-Chr14:13908339 | 2.76E-83 | dispersed | |
| Cma08g00912 | Cma-Chr8:5684400 | Cma02g01510 | Cma-Chr2:8610196 | 2.73E-66 | dispersed | |
| Cma17g00425 | Cma-Chr17:2504984 | Cma02g01510 | Cma-Chr2:8610196 | 9.56E-67 | dispersed | |
| Cma15g01173 | Cma-Chr15:7425014 | Cma02g01510 | Cma-Chr2:8610196 | 0 | wgd | |
| Cma16g01035 | Cma-Chr16:7958211 | Cma02g01510 | Cma-Chr2:8610196 | 5.61E-125 | wgd | |
| Cma18g01194 | Cma-Chr18:9477137 | Cma02g01510 | Cma-Chr2:8610196 | 1.19E-79 | wgd | |
| Cma02g01007 | Cma-Chr2:5983347 | Cma02g01510 | Cma-Chr2:8610196 | 5.62E-76 | wgd | |
| Cma02g01510 | Cma-Chr2:8610196 | Cma06g01133 | Cma-Chr6:7636265 | 7.98E-93 | wgd | |
| Cma02g01510 | Cma-Chr2:8610196 | Cma06g00747 | Cma-Chr6:3781325 | 4.85E-110 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma02g01510 | - | - | csv:101210208 | 518.464 |