Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma02g01513 | ATGGATGCCCACTCTCTTCCCCCTCCTTTCCACACCCGGGATTTCCATCTCCAACAACAATTCCACCACAACAATAATTCTGAAGAAGAACACAGCGCCACCACCACCCGTCTCAAACGAGATCGCGACGACGACGACCACAACAACTCTGCCCCTACCAGCGCTGGCGACGCTGCCGCTGCCGATGGAGAGATTACTCGACGACCCAGAGGAAGACCCGCCGGATCCAAGAATAAACCCAAGCCACCAATTATTATTACTCGCGACAGTGCCAACGCCCTTCGAACTCATGTCATCGAAGTCACCGACGGCTGTGACATCGTCGACAGCGTCGCCACCTTCGCCCGCCGCCGCCAGCGCGGCGTTTGCATTATGAGTGGTACCGGCACCGTCACGAACGTCACTCTCCGCCAGCCGGCCTCCCCCGGTGCAATTGTCAACTTACACGGTCGCTTTGAGATCTTATCCCTTGCCGGCTCCTTCCTCCCTCCGCCGGCTCCTCCGGCTGCAACCAGCTTGACCATTTACCTCGCCGGCGGTCAGGGGCAGGTAGTCGGCGGTAGCGTCGTGGGCACTTTAGTCGCCTCCGGCCCCGTCGTCATCATGGCTGCCTCGTTTAGCAACGCTGCTTATGAACGTCTGCCGTTGGAAGACGACGACCAACCGCCGATGCCGCCTCTGCAGGGCGGAGGCGGAATTGGGTCTCCGGATGAAGTTGGACAGTCCCAACCGCCGCAAACAGCGCATTATCAACAGCAACAACAACTTCTGGGCGACGGAAATGTGCCGTTATTTCACGGTTTGCCTCCGAATCTGTTAAACTCAATTCAAATGCCGCCATCTGAAGCAGCTTATTGGGGTACTGCTCGACCTCCGTACTAA | 882 | 57.94 | MDAHSLPPPFHTRDFHLQQQFHHNNNSEEEHSATTTRLKRDRDDDDHNNSAPTSAGDAAAADGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCDIVDSVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVNLHGRFEILSLAGSFLPPPAPPAATSLTIYLAGGQGQVVGGSVVGTLVASGPVVIMAASFSNAAYERLPLEDDDQPPMPPLQGGGGIGSPDEVGQSQPPQTAHYQQQQQLLGDGNVPLFHGLPPNLLNSIQMPPSEAAYWGTARPPY | 293 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 8630962 | 8631843 | + | CmaCh02G015130.1 | Cma02g01513 | 289264 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma02g01513 | 293 | PIRSF | ESCAROLA | 10 | 293 | IPR014476 | GO:0003680 | |
Cma02g01513 | 293 | MobiDBLite | consensus disorder prediction | 215 | 263 | - | - | |
Cma02g01513 | 293 | Gene3D | - | 94 | 221 | - | - | |
Cma02g01513 | 293 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 24-RELATED | 3 | 293 | - | - | |
Cma02g01513 | 293 | ProSiteProfiles | PPC domain profile profile. | 91 | 227 | IPR005175 | - | |
Cma02g01513 | 293 | CDD | DUF296 | 95 | 162 | IPR005175 | - | |
Cma02g01513 | 293 | MobiDBLite | consensus disorder prediction | 20 | 85 | - | - | |
Cma02g01513 | 293 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 3 | 293 | IPR014476 | GO:0003680 | |
Cma02g01513 | 293 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 95 | 208 | IPR005175 | - | |
Cma02g01513 | 293 | MobiDBLite | consensus disorder prediction | 239 | 259 | - | - | |
Cma02g01513 | 293 | MobiDBLite | consensus disorder prediction | 23 | 50 | - | - | |
Cma02g01513 | 293 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 91 | 223 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g01513 | Cma-Chr2:8630962 | Cma08g00950 | Cma-Chr8:5922784 | 7.51E-92 | dispersed | |
Cma15g01175 | Cma-Chr15:7443541 | Cma02g01513 | Cma-Chr2:8630962 | 1.56E-151 | wgd | |
Cma16g01151 | Cma-Chr16:8853135 | Cma02g01513 | Cma-Chr2:8630962 | 5.15E-68 | wgd | |
Cma02g01513 | Cma-Chr2:8630962 | Cma06g01130 | Cma-Chr6:7608057 | 9.67E-90 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma02g01513 | - | - | csv:101209716 | 431.795 |