Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01513 ATGGATGCCCACTCTCTTCCCCCTCCTTTCCACACCCGGGATTTCCATCTCCAACAACAATTCCACCACAACAATAATTCTGAAGAAGAACACAGCGCCACCACCACCCGTCTCAAACGAGATCGCGACGACGACGACCACAACAACTCTGCCCCTACCAGCGCTGGCGACGCTGCCGCTGCCGATGGAGAGATTACTCGACGACCCAGAGGAAGACCCGCCGGATCCAAGAATAAACCCAAGCCACCAATTATTATTACTCGCGACAGTGCCAACGCCCTTCGAACTCATGTCATCGAAGTCACCGACGGCTGTGACATCGTCGACAGCGTCGCCACCTTCGCCCGCCGCCGCCAGCGCGGCGTTTGCATTATGAGTGGTACCGGCACCGTCACGAACGTCACTCTCCGCCAGCCGGCCTCCCCCGGTGCAATTGTCAACTTACACGGTCGCTTTGAGATCTTATCCCTTGCCGGCTCCTTCCTCCCTCCGCCGGCTCCTCCGGCTGCAACCAGCTTGACCATTTACCTCGCCGGCGGTCAGGGGCAGGTAGTCGGCGGTAGCGTCGTGGGCACTTTAGTCGCCTCCGGCCCCGTCGTCATCATGGCTGCCTCGTTTAGCAACGCTGCTTATGAACGTCTGCCGTTGGAAGACGACGACCAACCGCCGATGCCGCCTCTGCAGGGCGGAGGCGGAATTGGGTCTCCGGATGAAGTTGGACAGTCCCAACCGCCGCAAACAGCGCATTATCAACAGCAACAACAACTTCTGGGCGACGGAAATGTGCCGTTATTTCACGGTTTGCCTCCGAATCTGTTAAACTCAATTCAAATGCCGCCATCTGAAGCAGCTTATTGGGGTACTGCTCGACCTCCGTACTAA 882 57.94 MDAHSLPPPFHTRDFHLQQQFHHNNNSEEEHSATTTRLKRDRDDDDHNNSAPTSAGDAAAADGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCDIVDSVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVNLHGRFEILSLAGSFLPPPAPPAATSLTIYLAGGQGQVVGGSVVGTLVASGPVVIMAASFSNAAYERLPLEDDDQPPMPPLQGGGGIGSPDEVGQSQPPQTAHYQQQQQLLGDGNVPLFHGLPPNLLNSIQMPPSEAAYWGTARPPY 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8630962 8631843 + CmaCh02G015130.1 Cma02g01513 289264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01513 293 PIRSF ESCAROLA 10 293 IPR014476 GO:0003680
Cma02g01513 293 MobiDBLite consensus disorder prediction 215 263 - -
Cma02g01513 293 Gene3D - 94 221 - -
Cma02g01513 293 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 24-RELATED 3 293 - -
Cma02g01513 293 ProSiteProfiles PPC domain profile profile. 91 227 IPR005175 -
Cma02g01513 293 CDD DUF296 95 162 IPR005175 -
Cma02g01513 293 MobiDBLite consensus disorder prediction 20 85 - -
Cma02g01513 293 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 3 293 IPR014476 GO:0003680
Cma02g01513 293 Pfam Plants and Prokaryotes Conserved (PCC) domain 95 208 IPR005175 -
Cma02g01513 293 MobiDBLite consensus disorder prediction 239 259 - -
Cma02g01513 293 MobiDBLite consensus disorder prediction 23 50 - -
Cma02g01513 293 SUPERFAMILY AF0104/ALDC/Ptd012-like 91 223 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01513 Cma-Chr2:8630962 Cma08g00950 Cma-Chr8:5922784 7.51E-92 dispersed
Cma15g01175 Cma-Chr15:7443541 Cma02g01513 Cma-Chr2:8630962 1.56E-151 wgd
Cma16g01151 Cma-Chr16:8853135 Cma02g01513 Cma-Chr2:8630962 5.15E-68 wgd
Cma02g01513 Cma-Chr2:8630962 Cma06g01130 Cma-Chr6:7608057 9.67E-90 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01513 - - csv:101209716 431.795