Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01521 ATGGAACCCACTGTCAATTTCCTTCAATCTCTCAATTCCTTGTTTCCATCGCATTCTGTTCAAAATCACCCCTTGATTTTCACTCTCCTTGCCGGTTTTCTCGTTCTTTTGTTTTTCAGATGCCGGCGCCGGCGCTTGCAGCTGCCACCGGGACCCCCCGGCGTTCCTCTGCTCGGAAATCTACTGTTTCTAGATCCACAGCTTCACACTTACTTCACCGAATTGGCCCGGAAATACGGTCCAATTGTAAAGCTCCAACTCGGTACAAAGATTGGTATAATCTTCAACTCACACTCTGTCGCACGTGAGGTGTTGAAGGACCACGATATCGCCTTCGCCAACCACGACGTTCCTCGGGCAGCCAGAGCCGCTACATACGGCGGTTACGACATAGTTTGGAGTCCATACGGACCCGAGTGGCGGATGTTGAGAAAAATTTGTACGATGAAGATGCTCAGTAACGCTAGTTTGGACTCTGTCTACGAGCTCCGCCGTAGAGAGGTCAGAAACACCGTTGCTCACCTATACCGGCGAGCCGGGTCGGCGGTGAACATAGGAGAGCAGGGGTTTTTGACGGTTTTCAACATCGTGACGAGCATGTTGTGGGGTGGGTCGGTGGACGGGGACGAAAGGGACGGGATTGCGGCTGAGTTCAGAGAGCTAATTTCGGACATAACTTTGCTGTTGGGTAAGCCTAATGTGTCGGACTTTTTCCCGAGCTTGGCTCGTTTCGATCTCCAAGGCATCGAGAAACAAATGCTTAAGCTCGCACCAAAATTGGACAACATCTTCGAAAAGATGATCAATCAACGACTGAGAATGGCCGATGGGGACGAGAATCAGGACAAAAACGATTTCTTGCAATTCTTACTTCAGATCAAAGACGAAGGCGATTCCAAGACGCCTCTCACCATGGTTCAAATCAAAGGCGTGCTCATGGACATGGTGGTAGGTGGAACAGACACATCCTCAAACACCATTGAGTTTGCGATGGCAGAGATGATGAAGAACCCAAATGTTCTAAAGAAAGTGCAAGAAGAATTAGCCGTCGTGATCGGAGACGAGAACATCGTAGAAGAGTCCCATATTGAGAGTCTGCCATATCTGAAAGCCGTAGTGAAAGAAACGTTGCGTCTGCATCCAGTGTTGCCGCTGCTAGTGCCGCACTGTCCGAGCGAAACCACCGTGATATGTAATTACACAATCCCAAAGGGGTGTCGGGTGTTCATCAACGCGTGGGCCATTCAGCGAGACCCCAATCAATGGAGAAACCCATTGGAGTTTGAGCCGGAGAGATTCTTGAATGATAAGATGGATTTCAACGGGAGTGATTTCCGATTCATTCCATTTGGATCAGGGAGAAGAAACTGCGCAGGGACAGGGTTGGCGGAAAGAATGATTATGTATTTGCTTGCCACGTTTTTGCACTCGTTTGATTGGAAATTGAAAGAGGGTGAGGAATTGAAGACCGACGAGAAATTTGGGATTGTTTTGAAGATGAAGACTCCTCTGGTTGCCATCTGCACTCCCAGGCTCTCCCACCCCACTCTGTATCGGTAA 1560 49.1 MEPTVNFLQSLNSLFPSHSVQNHPLIFTLLAGFLVLLFFRCRRRRLQLPPGPPGVPLLGNLLFLDPQLHTYFTELARKYGPIVKLQLGTKIGIIFNSHSVAREVLKDHDIAFANHDVPRAARAATYGGYDIVWSPYGPEWRMLRKICTMKMLSNASLDSVYELRRREVRNTVAHLYRRAGSAVNIGEQGFLTVFNIVTSMLWGGSVDGDERDGIAAEFRELISDITLLLGKPNVSDFFPSLARFDLQGIEKQMLKLAPKLDNIFEKMINQRLRMADGDENQDKNDFLQFLLQIKDEGDSKTPLTMVQIKGVLMDMVVGGTDTSSNTIEFAMAEMMKNPNVLKKVQEELAVVIGDENIVEESHIESLPYLKAVVKETLRLHPVLPLLVPHCPSETTVICNYTIPKGCRVFINAWAIQRDPNQWRNPLEFEPERFLNDKMDFNGSDFRFIPFGSGRRNCAGTGLAERMIMYLLATFLHSFDWKLKEGEELKTDEKFGIVLKMKTPLVAICTPRLSHPTLYR 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8661101 8662925 - CmaCh02G015210.1 Cma02g01521 289272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01521 519 PANTHER OS08G0547900 PROTEIN 22 518 - -
Cma02g01521 519 SUPERFAMILY Cytochrome P450 49 511 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma02g01521 519 Pfam Cytochrome P450 49 502 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma02g01521 519 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 450 459 IPR017972 GO:0005506|GO:0016705
Cma02g01521 519 Gene3D Cytochrome P450 41 515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma02g01521 519 PANTHER CYTOCHROME P450, FAMILY 706, SUBFAMILY A, POLYPEPTIDE 3-RELATED 22 518 - -
Cma02g01521 519 PRINTS P450 superfamily signature 318 335 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma02g01521 519 PRINTS P450 superfamily signature 371 382 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma02g01521 519 PRINTS P450 superfamily signature 448 457 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma02g01521 519 PRINTS P450 superfamily signature 457 468 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma02g01521 519 PRINTS E-class P450 group I signature 76 95 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma02g01521 519 PRINTS E-class P450 group I signature 192 210 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma02g01521 519 PRINTS E-class P450 group I signature 307 324 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma02g01521 519 PRINTS E-class P450 group I signature 327 353 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma02g01521 519 PRINTS E-class P450 group I signature 370 388 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma02g01521 519 PRINTS E-class P450 group I signature 411 435 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma02g01521 519 PRINTS E-class P450 group I signature 447 457 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma02g01521 519 PRINTS E-class P450 group I signature 457 480 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01521 Cma-Chr2:8661101 Cma15g01159 Cma-Chr15:7350358 0 dispersed
Cma15g01158 Cma-Chr15:7346779 Cma02g01521 Cma-Chr2:8661101 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01521 - - bhj:120067210 741.495